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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1711 A_BomoASG_c12410_g1_i1
496bp
 abnormal_cell_migration_protein_10_isoform_X2_[Bombyx_mori]
FPKM:2.41 TPM:1.85
1712 A_BomoASG_c12411_g1_i1
245bp
FPKM:3.17 TPM:2.43
1713 A_BomoASG_c12412_g1_i1
428bp
FPKM:3.44 TPM:2.64
1714 A_BomoASG_c12413_g1_i1
674bp
 protein_disabled_[Bombyx_mori]
FPKM:3.74 TPM:2.87
1715 A_BomoASG_c12416_g1_i1
515bp
FPKM:2.29 TPM:1.75
1716 A_BomoASG_c12417_g1_i1
498bp
FPKM:6.17 TPM:4.73
1717 A_BomoASG_c12418_g1_i1
314bp
FPKM:9.18 TPM:7.04
1718 A_BomoASG_c12418_g2_i1
406bp
FPKM:24.32 TPM:18.65
1719 A_BomoASG_c12419_g1_i1
313bp
 reverse_transcriptase,_partial_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.48 TPM:1.13
1720 A_BomoASG_c1241_g1_i1
292bp
 thiamin_pyrophosphokinase_1_[Bombyx_mori]
FPKM:2.97 TPM:2.28
1721 A_BomoASG_c12420_g1_i1
2103bp
 ATP-dependent_zinc_metalloprotease_YME1_homolog_isoform_X2_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004176 F ATP-dependent peptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005524 F ATP binding
GO:0005743 C mitochondrial inner membrane
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0007005 P mitochondrion organization
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:14.20 TPM:10.90
1722 A_BomoASG_c12420_g1_i2
2115bp
 ATP-dependent_zinc_metalloprotease_YME1_homolog_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004176 F ATP-dependent peptidase activity
GO:0004222 F metalloendopeptidase activity
GO:0005524 F ATP binding
GO:0005743 C mitochondrial inner membrane
GO:0006508 P proteolysis
GO:0006515 P protein quality control for misfolded or incompletely synthesized proteins
GO:0007005 P mitochondrion organization
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:21.54 TPM:16.52
1723 A_BomoASG_c12421_g1_i1
543bp
 reverse_transcriptase,_partial_[Drosophila_neomorpha]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.12 TPM:1.63
1724 A_BomoASG_c12422_g1_i1
639bp
FPKM:5.47 TPM:4.20
1725 A_BomoASG_c12425_g1_i1
509bp
 uncharacterized_protein_LOC101737240_[Bombyx_mori]
FPKM:3.49 TPM:2.68
1726 A_BomoASG_c12427_g1_i1
1195bp
 transmembrane_protein_104_homolog_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:2.04 TPM:1.57
1727 A_BomoASG_c12428_g1_i1
614bp
FPKM:2.05 TPM:1.57
1728 A_BomoASG_c12429_g1_i1
816bp
 uncharacterized_protein_LOC101736218_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0030099 P myeloid cell differentiation
GO:0030225 P macrophage differentiation
GO:0030851 P granulocyte differentiation
GO:0043249 P erythrocyte maturation
FPKM:3.39 TPM:2.60
1729 A_BomoASG_c12430_g1_i1
340bp
FPKM:6.96 TPM:5.34
1730 A_BomoASG_c12431_g1_i1
625bp
 epsin-1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0030100 P regulation of endocytosis
GO:0030128 C clathrin coat of endocytic vesicle
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
FPKM:10.51 TPM:8.06
1731 A_BomoASG_c12431_g1_i2
701bp
 epsin-1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0030100 P regulation of endocytosis
GO:0030128 C clathrin coat of endocytic vesicle
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
FPKM:46.50 TPM:35.67
1732 A_BomoASG_c12431_g1_i3
673bp
 epsin-1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0030100 P regulation of endocytosis
GO:0030128 C clathrin coat of endocytic vesicle
GO:0030136 C clathrin-coated vesicle
GO:0031410 C cytoplasmic vesicle
GO:0043231 C intracellular membrane-bounded organelle
FPKM:4.21 TPM:3.23
1733 A_BomoASG_c12432_g1_i1
434bp
 histone-lysine_N-methyltransferase_SETMAR-like_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:2.73 TPM:2.10
1734 A_BomoASG_c12432_g1_i2
210bp
 histone-lysine_N-methyltransferase_SETMAR-like_[Bombyx_mori]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:0.98 TPM:0.75
1735 A_BomoASG_c12433_g1_i1
312bp
FPKM:8.55 TPM:6.56
1736 A_BomoASG_c12434_g1_i1
276bp
FPKM:2.87 TPM:2.20
1737 A_BomoASG_c12435_g1_i1
279bp
FPKM:0.00 TPM:0.00
1738 A_BomoASG_c12435_g1_i2
290bp
FPKM:0.43 TPM:0.33
1739 A_BomoASG_c12436_g1_i1
1237bp
 uncharacterized_protein_CG5902_isoform_X1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0019233 P sensory perception of pain
FPKM:15.80 TPM:12.12
1740 A_BomoASG_c12436_g1_i2
269bp
 uncharacterized_protein_CG5902_isoform_X1_[Bombyx_mori]
FPKM:8.23 TPM:6.31
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