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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1561 A_BomoASG_c12263_g1_i1
2052bp
 ras-like_GTP-binding_protein_Rho1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000281 P mitotic cytokinesis
GO:0001736 P establishment of planar polarity
GO:0001737 P establishment of imaginal disc-derived wing hair orientation
GO:0001745 P compound eye morphogenesis
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0006974 P cellular response to DNA damage stimulus
GO:0007010 P cytoskeleton organization
GO:0007015 P actin filament organization
GO:0007164 P establishment of tissue polarity
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007254 P JNK cascade
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007349 P cellularization
GO:0007368 P determination of left/right symmetry
GO:0007369 P gastrulation
GO:0007370 P ventral furrow formation
GO:0007374 P posterior midgut invagination
GO:0007377 P germ-band extension
GO:0007391 P dorsal closure
GO:0007395 P dorsal closure, spreading of leading edge cells
GO:0007405 P neuroblast proliferation
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007435 P salivary gland morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007601 P visual perception
GO:0008045 P motor neuron axon guidance
GO:0008347 P glial cell migration
GO:0008354 P germ cell migration
GO:0010004 P gastrulation involving germ band extension
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016203 P muscle attachment
GO:0016318 P ommatidial rotation
GO:0016324 C apical plasma membrane
GO:0016476 P regulation of embryonic cell shape
GO:0019900 F kinase binding
GO:0030036 P actin cytoskeleton organization
GO:0030239 P myofibril assembly
GO:0030334 P regulation of cell migration
GO:0030589 P pseudocleavage involved in syncytial blastoderm formation
GO:0030866 P cortical actin cytoskeleton organization
GO:0030950 P establishment or maintenance of actin cytoskeleton polarity
GO:0031532 P actin cytoskeleton reorganization
GO:0034613 P cellular protein localization
GO:0035006 P melanization defense response
GO:0035099 P hemocyte migration
GO:0035147 P branch fusion, open tracheal system
GO:0035149 P lumen formation, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035298 P regulation of Malpighian tubule size
GO:0035317 P imaginal disc-derived wing hair organization
GO:0042060 P wound healing
GO:0042249 P establishment of planar polarity of embryonic epithelium
GO:0044291 C cell-cell contact zone
GO:0045179 C apical cortex
GO:0045184 P establishment of protein localization
GO:0045199 P maintenance of epithelial cell apical/basal polarity
GO:0046663 P dorsal closure, leading edge cell differentiation
GO:0046664 P dorsal closure, amnioserosa morphology change
GO:0048812 P neuron projection morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0050770 P regulation of axonogenesis
GO:0050896 P response to stimulus
GO:0051017 P actin filament bundle assembly
GO:0051489 P regulation of filopodium assembly
GO:0051493 P regulation of cytoskeleton organization
GO:0070252 P actin-mediated cell contraction
GO:0070451 C cell hair
GO:0070593 P dendrite self-avoidance
GO:0071896 P protein localization to adherens junction
GO:0071902 P positive regulation of protein serine/threonine kinase activity
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090251 P protein localization involved in establishment of planar polarity
GO:0090254 P cell elongation involved in imaginal disc-derived wing morphogenesis
GO:0090303 P positive regulation of wound healing
GO:1901739 P regulation of myoblast fusion
GO:1903475 P mitotic actomyosin contractile ring assembly
GO:1904059 P regulation of locomotor rhythm
FPKM:28.43 TPM:21.80
1562 A_BomoASG_c12263_g1_i2
1975bp
 ras-like_GTP-binding_protein_Rho1_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000281 P mitotic cytokinesis
GO:0001736 P establishment of planar polarity
GO:0001737 P establishment of imaginal disc-derived wing hair orientation
GO:0001745 P compound eye morphogenesis
GO:0003779 F actin binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005938 C cell cortex
GO:0006897 P endocytosis
GO:0006974 P cellular response to DNA damage stimulus
GO:0007010 P cytoskeleton organization
GO:0007015 P actin filament organization
GO:0007164 P establishment of tissue polarity
GO:0007165 P signal transduction
GO:0007173 P epidermal growth factor receptor signaling pathway
GO:0007254 P JNK cascade
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007298 P border follicle cell migration
GO:0007349 P cellularization
GO:0007368 P determination of left/right symmetry
GO:0007369 P gastrulation
GO:0007370 P ventral furrow formation
GO:0007374 P posterior midgut invagination
GO:0007377 P germ-band extension
GO:0007391 P dorsal closure
GO:0007395 P dorsal closure, spreading of leading edge cells
GO:0007405 P neuroblast proliferation
GO:0007411 P axon guidance
GO:0007422 P peripheral nervous system development
GO:0007424 P open tracheal system development
GO:0007435 P salivary gland morphogenesis
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007601 P visual perception
GO:0008045 P motor neuron axon guidance
GO:0008347 P glial cell migration
GO:0008354 P germ cell migration
GO:0010004 P gastrulation involving germ band extension
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016203 P muscle attachment
GO:0016318 P ommatidial rotation
GO:0016324 C apical plasma membrane
GO:0016476 P regulation of embryonic cell shape
GO:0019900 F kinase binding
GO:0030036 P actin cytoskeleton organization
GO:0030239 P myofibril assembly
GO:0030334 P regulation of cell migration
GO:0030589 P pseudocleavage involved in syncytial blastoderm formation
GO:0030866 P cortical actin cytoskeleton organization
GO:0030950 P establishment or maintenance of actin cytoskeleton polarity
GO:0031532 P actin cytoskeleton reorganization
GO:0034613 P cellular protein localization
GO:0035006 P melanization defense response
GO:0035099 P hemocyte migration
GO:0035147 P branch fusion, open tracheal system
GO:0035149 P lumen formation, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0035277 P spiracle morphogenesis, open tracheal system
GO:0035298 P regulation of Malpighian tubule size
GO:0035317 P imaginal disc-derived wing hair organization
GO:0042060 P wound healing
GO:0042249 P establishment of planar polarity of embryonic epithelium
GO:0044291 C cell-cell contact zone
GO:0045179 C apical cortex
GO:0045184 P establishment of protein localization
GO:0045199 P maintenance of epithelial cell apical/basal polarity
GO:0046663 P dorsal closure, leading edge cell differentiation
GO:0046664 P dorsal closure, amnioserosa morphology change
GO:0048812 P neuron projection morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0050770 P regulation of axonogenesis
GO:0050896 P response to stimulus
GO:0051017 P actin filament bundle assembly
GO:0051489 P regulation of filopodium assembly
GO:0051493 P regulation of cytoskeleton organization
GO:0070252 P actin-mediated cell contraction
GO:0070451 C cell hair
GO:0070593 P dendrite self-avoidance
GO:0071896 P protein localization to adherens junction
GO:0071902 P positive regulation of protein serine/threonine kinase activity
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090251 P protein localization involved in establishment of planar polarity
GO:0090254 P cell elongation involved in imaginal disc-derived wing morphogenesis
GO:0090303 P positive regulation of wound healing
GO:1901739 P regulation of myoblast fusion
GO:1903475 P mitotic actomyosin contractile ring assembly
GO:1904059 P regulation of locomotor rhythm
FPKM:122.49 TPM:93.96
1563 A_BomoASG_c12264_g1_i1
675bp
 uncharacterized_protein_LOC101746867_isoform_X3_[Bombyx_mori]
FPKM:58.33 TPM:44.74
1564 A_BomoASG_c12264_g1_i2
1059bp
 uncharacterized_protein_LOC101746867_isoform_X2_[Bombyx_mori]
FPKM:150.18 TPM:115.20
1565 A_BomoASG_c12265_g1_i1
3244bp
 putative_ATP-dependent_RNA_helicase_me31b_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007279 P pole cell formation
GO:0010494 C cytoplasmic stress granule
GO:0010501 P RNA secondary structure unwinding
GO:0010906 P regulation of glucose metabolic process
GO:0016787 F hydrolase activity
GO:0030707 P ovarian follicle cell development
GO:0033962 P P-body assembly
GO:0035195 P gene silencing by miRNA
GO:0043186 C P granule
GO:0046959 P habituation
GO:0050688 P regulation of defense response to virus
GO:0090328 P regulation of olfactory learning
FPKM:118.21 TPM:90.67
1566 A_BomoASG_c12266_g1_i1
252bp
FPKM:0.59 TPM:0.45
1567 A_BomoASG_c12267_g1_i1
4783bp
 kinesin_heavy_chain_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001754 P eye photoreceptor cell differentiation
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005871 C kinesin complex
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0006886 P intracellular protein transport
GO:0007018 P microtubule-based movement
GO:0007269 P neurotransmitter secretion
GO:0007303 P cytoplasmic transport, nurse cell to oocyte
GO:0007310 P oocyte dorsal/ventral axis specification
GO:0007315 P pole plasm assembly
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0008017 F microtubule binding
GO:0008088 P axo-dendritic transport
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0008152 P metabolic process
GO:0008345 P larval locomotory behavior
GO:0008574 F plus-end-directed microtubule motor activity
GO:0010970 P transport along microtubule
GO:0016482 P cytosolic transport
GO:0019227 P neuronal action potential propagation
GO:0030011 P maintenance of cell polarity
GO:0030478 C actin cap
GO:0035371 C microtubule plus-end
GO:0035617 P stress granule disassembly
GO:0040023 P nuclear migration
GO:0043005 C neuron projection
GO:0045451 P pole plasm oskar mRNA localization
GO:0046785 P microtubule polymerization
GO:0046843 P dorsal appendage formation
GO:0047497 P mitochondrion transport along microtubule
GO:0048311 P mitochondrion distribution
GO:0048312 P intracellular distribution of mitochondria
GO:0048741 P skeletal muscle fiber development
GO:0048812 P neuron projection morphogenesis
GO:0048813 P dendrite morphogenesis
GO:0051012 P microtubule sliding
GO:0051299 P centrosome separation
GO:0061572 P actin filament bundle organization
GO:0098793 C presynapse
FPKM:68.05 TPM:52.20
1568 A_BomoASG_c12268_g1_i1
2305bp
 putative_transporter_SVOPL_isoform_X1_[Bombyx_mori]
GO:0001669 C acrosomal vesicle
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0055085 P transmembrane transport
FPKM:43.68 TPM:33.50
1569 A_BomoASG_c12270_g1_i1
2602bp
 heat_shock_protein_83_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006457 P protein folding
GO:0006950 P response to stress
GO:0051082 F unfolded protein binding
FPKM:478.66 TPM:367.15
1570 A_BomoASG_c12271_g1_i1
1593bp
 uncharacterized_protein_LOC101744804_isoform_X1_[Bombyx_mori]
FPKM:78.86 TPM:60.49
1571 A_BomoASG_c12272_g1_i1
874bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
GO:0072332 P intrinsic apoptotic signaling pathway by p53 class mediator
FPKM:25.14 TPM:19.28
1572 A_BomoASG_c12272_g1_i2
1595bp
 double-stranded_RNA-binding_zinc_finger_protein_JAZ_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0046872 F metal ion binding
FPKM:69.92 TPM:53.63
1573 A_BomoASG_c12273_g1_i1
2617bp
 bestrophin-4_isoform_X2_[Bombyx_mori]
GO:0005254 F chloride channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0015698 P inorganic anion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0034707 C chloride channel complex
GO:0043271 P negative regulation of ion transport
GO:1902476 P chloride transmembrane transport
FPKM:109.17 TPM:83.74
1574 A_BomoASG_c12275_g1_i1
926bp
 histone_RNA_hairpin-binding_protein_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
FPKM:1.42 TPM:1.09
1575 A_BomoASG_c12275_g1_i2
1031bp
 histone_RNA_hairpin-binding_protein_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
FPKM:18.67 TPM:14.32
1576 A_BomoASG_c12276_g1_i1
3419bp
FPKM:53.26 TPM:40.85
1577 A_BomoASG_c12277_g1_i1
2707bp
 muscle_M-line_assembly_protein_unc-89_isoform_X2_[Bombyx_mori]
FPKM:33.61 TPM:25.78
1578 A_BomoASG_c12278_g1_i1
232bp
FPKM:13.13 TPM:10.07
1579 A_BomoASG_c12279_g1_i1
264bp
FPKM:2.65 TPM:2.03
1580 A_BomoASG_c12280_g1_i1
215bp
FPKM:4.52 TPM:3.47
1581 A_BomoASG_c12281_g1_i1
244bp
FPKM:6.40 TPM:4.91
1582 A_BomoASG_c12283_g1_i1
281bp
FPKM:1.38 TPM:1.06
1583 A_BomoASG_c12284_g1_i1
403bp
FPKM:0.95 TPM:0.73
1584 A_BomoASG_c12285_g1_i1
414bp
FPKM:7.93 TPM:6.08
1585 A_BomoASG_c12286_g1_i1
2530bp
FPKM:32.46 TPM:24.90
1586 A_BomoASG_c12287_g1_i1
1546bp
 cell_growth-regulating_nucleolar_protein_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
FPKM:40.64 TPM:31.17
1587 A_BomoASG_c12288_g1_i1
265bp
FPKM:3.15 TPM:2.41
1588 A_BomoASG_c12289_g1_i1
293bp
FPKM:2.11 TPM:1.62
1589 A_BomoASG_c12290_g1_i1
757bp
 zinc_finger_protein_Xfin_isoform_X1_[Bombyx_mori]
FPKM:16.15 TPM:12.39
1590 A_BomoASG_c12291_g1_i1
684bp
FPKM:4.56 TPM:3.50
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