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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
511 A_SariMG_comp116328_c0_seq1
311bp
FPKM:4.03 TPM:4.04
512 A_SariMG_comp116329_c0_seq1
707bp
FPKM:2.24 TPM:2.25
513 A_SariMG_comp1163341_c0_seq1
228bp
PREDICTED:_catalase-like_[Amyelois_transitella]
GO:0004096 F catalase activity
GO:0004601 F peroxidase activity
GO:0006979 P response to oxidative stress
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0042744 P hydrogen peroxide catabolic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:0.84 TPM:0.85
514 A_SariMG_comp116348_c0_seq1
481bp
FPKM:3.30 TPM:3.31
515 A_SariMG_comp116371_c0_seq1
1048bp
FPKM:3.39 TPM:3.40
516 A_SariMG_comp116373_c0_seq1
752bp
FPKM:3.27 TPM:3.28
517 A_SariMG_comp11639_c0_seq1
219bp
FPKM:0.94 TPM:0.94
518 A_SariMG_comp116412_c0_seq1
219bp
FPKM:5.64 TPM:5.66
519 A_SariMG_comp116413_c0_seq1
425bp
FPKM:3.96 TPM:3.97
520 A_SariMG_comp116425_c0_seq1
555bp
FPKM:2.71 TPM:2.72
521 A_SariMG_comp116437_c0_seq1
204bp
FPKM:1.15 TPM:1.16
522 A_SariMG_comp116473_c0_seq1
509bp
FPKM:2.99 TPM:3.00
523 A_SariMG_comp116494_c0_seq1
393bp
FPKM:3.98 TPM:3.99
524 A_SariMG_comp116507_c0_seq1
2045bp
Nibrin_[Operophtera_brumata]
GO:0000723 P telomere maintenance
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0000784 C chromosome, telomeric region
GO:0003684 F damaged DNA binding
GO:0004003 F DNA helicase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006302 P double-strand break repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0008134 F transcription factor binding
GO:0016233 P telomere capping
GO:0030870 C Mre11 complex
GO:0032508 P DNA duplex unwinding
GO:0042405 C nuclear inclusion body
GO:0042770 P signal transduction in response to DNA damage
GO:0047485 F protein N-terminus binding
GO:0048145 P regulation of fibroblast proliferation
GO:0051321 P meiotic cell cycle
FPKM:2.68 TPM:2.68
525 A_SariMG_comp116510_c0_seq1
1063bp
PREDICTED:_zinc_finger_protein_836-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.72 TPM:2.73
526 A_SariMG_comp116524_c0_seq1
313bp
FPKM:4.98 TPM:5.00
527 A_SariMG_comp116536_c0_seq1
732bp
PREDICTED:_uncharacterized_protein_LOC106137676_[Amyelois_transitella]
FPKM:3.55 TPM:3.56
528 A_SariMG_comp116547_c0_seq1
924bp
FPKM:3.46 TPM:3.47
529 A_SariMG_comp116551_c0_seq1
206bp
FPKM:1.87 TPM:1.87
530 A_SariMG_comp116556_c0_seq1
952bp
FPKM:2.50 TPM:2.50
531 A_SariMG_comp116563_c0_seq1
274bp
PREDICTED:_RING_finger_protein_44-like_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000209 P protein polyubiquitination
GO:0003714 F transcription corepressor activity
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0017053 C transcription repressor complex
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043433 P negative regulation of DNA-binding transcription factor activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0060816 P random inactivation of X chromosome
GO:0061630 F ubiquitin protein ligase activity
GO:1900095 P regulation of dosage compensation by inactivation of X chromosome
FPKM:2.03 TPM:2.03
532 A_SariMG_comp116590_c0_seq1
895bp
FPKM:3.33 TPM:3.34
533 A_SariMG_comp116618_c0_seq1
1066bp
PREDICTED:_plasma_membrane_calcium-transporting_ATPase_2_isoform_X7_[Bombyx_mori]
FPKM:3.14 TPM:3.15
534 A_SariMG_comp116636_c0_seq1
439bp
FPKM:3.20 TPM:3.21
535 A_SariMG_comp116638_c0_seq1
345bp
FPKM:3.60 TPM:3.61
536 A_SariMG_comp116640_c0_seq1
1791bp
FPKM:2.00 TPM:2.00
537 A_SariMG_comp116679_c0_seq1
911bp
PREDICTED:_activator_of_basal_transcription_1-like_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0034462 P small-subunit processome assembly
GO:0042254 P ribosome biogenesis
FPKM:2.53 TPM:2.54
538 A_SariMG_comp116722_c0_seq1
990bp
FPKM:2.76 TPM:2.77
539 A_SariMG_comp116734_c0_seq1
309bp
FPKM:3.64 TPM:3.65
540 A_SariMG_comp116740_c0_seq1
446bp
FPKM:4.73 TPM:4.74
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