SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp116679_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_activator_of_basal_transcription_1-like_[Plutella_xylostella]
Ontology
GO:0000166 F nucleotide binding
GO:0000447 P endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000472 P endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0034462 P small-subunit processome assembly
GO:0042254 P ribosome biogenesis
Transcript
Level		FPKM:2.53 TPM:2.54
ORF EntryO_SariMG29182_complete:A_SariMG_comp116679_c0_seq1
Sequence
(Nucleotide)
AAAAAAGTTAATTAACATTGGAGAAAAATATTTTAAAAAGGAATGCCATTGAAAATGTAC
TAAAATATAACTAGAAATCAGTATATAAATTACTGGCTGTCTGGCAAATGATATTTAATG
GTTTTAATAAATATACAAAAATTTAACAAAATTAAAGTAAAATATTATTTCAGGACAAAT
GGGAACCTTAAGAGTTAGGAATAGAATACACATATCAATTCGAAATTATTGAGCCTCAAG
AGCTTTTCGTTTTTTCATTTTCTTGCTCTTTTCCACATTACTTTGTAAGTACTGTGCCTC
CTTCTTAGCCTGTGCAATCTCCGCTCTTAATCTCTGTTTCATTGCAGCCCTCTCATATGC
CAATCTCTCACTTAGATGTATCCATTTGAACCTAGGTATATACTTTATATTCCATATCAT
GTCATAGTAGCGAGATTTCTTTCTAGTACCAATTTTTGTGTTGTTTAGTTTTGCTGCCAC
TTCCTTAGCAACTTTTTTCTTTTGAAATTCCACCCACCCCTCTGAGAACTGATTTGGAAC
ACGTTTTCGCCTCTCGCCTGGTTTGCCGTTTGGCTGCAGGTAAATTCTTCCAACTTCTCC
AAATTGACTAAATATTTCACGTATTTTCGCCACATTCATGTAAGGAGCAATCGTAGACAA
ATATATGATCCCTTTCTTCCTTGTTTTCTTCTTATTTATATATTCACTAGAGTTCAAATT
ACTATCTATACTGTTTTGGCTACTATCGTAATCTGAGCCATTTTCAGGCACTCTTTCGAT
ATTTTTTATATCTGGCATTATAAGTTCTTATAGTCAATAAAACTTTAACCTTTTTATTAT
TTTTTTTTTACCTTAAACAAAATAAATTATTTTTTGGAACCGCTGACACTTTTACTCGAA
GATGATTTTTT
(911 bp)

- SilkBase 1999-2023 -