SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/144953
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
601 A_BomoN4EE_TR100360_c0_g1_i1
237bp
 PREDICTED:_uncharacterized_protein_LOC101740474_[Bombyx_mori]
FPKM:1.57 TPM:2.09
602 A_BomoN4EE_TR100360_c0_g2_i1
527bp
 PREDICTED:_uncharacterized_protein_LOC101740474_[Bombyx_mori]
FPKM:0.17 TPM:0.23
603 A_BomoN4EE_TR100361_c0_g1_i1
1522bp
 PREDICTED:_uncharacterized_protein_LOC101743957_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005783 C endoplasmic reticulum
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
FPKM:11.65 TPM:15.52
604 A_BomoN4EE_TR100362_c0_g1_i1
231bp
 membrane_protein_[Thalassospira_lucentensis]
FPKM:0.00 TPM:0.00
605 A_BomoN4EE_TR100363_c0_g1_i1
2023bp
 PREDICTED:_uncharacterized_protein_LOC106102540_[Papilio_polytes]
FPKM:1.63 TPM:2.17
606 A_BomoN4EE_TR100363_c0_g2_i1
2584bp
 PREDICTED:_uncharacterized_protein_LOC106114517_[Papilio_xuthus]
FPKM:3.15 TPM:4.20
607 A_BomoN4EE_TR100364_c0_g1_i1
1616bp
 PREDICTED:_cryptochrome-1_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000989 F obsolete transcription factor activity, transcription factor binding
GO:0001046 F core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003690 F double-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006094 P gluconeogenesis
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006975 P DNA damage induced protein phosphorylation
GO:0007165 P signal transduction
GO:0007623 P circadian rhythm
GO:0008134 F transcription factor binding
GO:0009881 F photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0019900 F kinase binding
GO:0019901 F protein kinase binding
GO:0019902 F phosphatase binding
GO:0019915 P lipid storage
GO:0031397 P negative regulation of protein ubiquitination
GO:0032868 P response to insulin
GO:0032922 P circadian regulation of gene expression
GO:0033762 P response to glucagon
GO:0035257 F nuclear receptor binding
GO:0042593 P glucose homeostasis
GO:0042752 P regulation of circadian rhythm
GO:0042754 P negative regulation of circadian rhythm
GO:0042826 F histone deacetylase binding
GO:0043130 F ubiquitin binding
GO:0043153 P entrainment of circadian clock by photoperiod
GO:0045744 P negative regulation of G protein-coupled receptor signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0050896 P response to stimulus
GO:2000001 P regulation of DNA damage checkpoint
GO:2000323 P negative regulation of glucocorticoid receptor signaling pathway
GO:2000850 P negative regulation of glucocorticoid secretion
FPKM:5.26 TPM:7.00
608 A_BomoN4EE_TR100364_c0_g2_i1
1728bp
 PREDICTED:_cryptochrome-1_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0000989 F obsolete transcription factor activity, transcription factor binding
GO:0001046 F core promoter sequence-specific DNA binding
GO:0001047 F core promoter sequence-specific DNA binding
GO:0003690 F double-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005829 C cytosol
GO:0006094 P gluconeogenesis
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006975 P DNA damage induced protein phosphorylation
GO:0007165 P signal transduction
GO:0007623 P circadian rhythm
GO:0008134 F transcription factor binding
GO:0009881 F photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0019900 F kinase binding
GO:0019901 F protein kinase binding
GO:0019902 F phosphatase binding
GO:0019915 P lipid storage
GO:0031397 P negative regulation of protein ubiquitination
GO:0032868 P response to insulin
GO:0032922 P circadian regulation of gene expression
GO:0033762 P response to glucagon
GO:0035257 F nuclear receptor binding
GO:0042593 P glucose homeostasis
GO:0042752 P regulation of circadian rhythm
GO:0042754 P negative regulation of circadian rhythm
GO:0042826 F histone deacetylase binding
GO:0043130 F ubiquitin binding
GO:0043153 P entrainment of circadian clock by photoperiod
GO:0045744 P negative regulation of G protein-coupled receptor signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048511 P rhythmic process
GO:0050896 P response to stimulus
GO:2000001 P regulation of DNA damage checkpoint
GO:2000323 P negative regulation of glucocorticoid receptor signaling pathway
GO:2000850 P negative regulation of glucocorticoid secretion
FPKM:0.72 TPM:0.95
609 A_BomoN4EE_TR100365_c0_g1_i1
2064bp
 PREDICTED:_glycerophosphodiester_phosphodiesterase_1-like_isoform_X1_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006629 P lipid metabolic process
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0008081 F phosphoric diester hydrolase activity
GO:0008889 F glycerophosphodiester phosphodiesterase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0046872 F metal ion binding
GO:0047395 F glycerophosphoinositol glycerophosphodiesterase activity
FPKM:3.35 TPM:4.46
610 A_BomoN4EE_TR100366_c0_g1_i1
3768bp
 PREDICTED:_clustered_mitochondria_protein_homolog_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0007005 P mitochondrion organization
GO:0048312 P intracellular distribution of mitochondria
FPKM:6.06 TPM:8.07
611 A_BomoN4EE_TR100366_c0_g1_i2
3534bp
 PREDICTED:_clustered_mitochondria_protein_homolog_[Plutella_xylostella]
GO:0005737 C cytoplasm
GO:0007005 P mitochondrion organization
GO:0048312 P intracellular distribution of mitochondria
FPKM:0.16 TPM:0.21
612 A_BomoN4EE_TR100366_c0_g1_i3
3747bp
 PREDICTED:_clustered_mitochondria_protein_homolog_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0007005 P mitochondrion organization
GO:0048312 P intracellular distribution of mitochondria
FPKM:0.55 TPM:0.73
613 A_BomoN4EE_TR100366_c0_g1_i4
3555bp
 PREDICTED:_clustered_mitochondria_protein_homolog_[Plutella_xylostella]
GO:0005737 C cytoplasm
GO:0007005 P mitochondrion organization
GO:0048312 P intracellular distribution of mitochondria
FPKM:2.25 TPM:3.00
614 A_BomoN4EE_TR100367_c0_g1_i1
250bp
 PREDICTED:_uncharacterized_protein_LOC105842536_[Bombyx_mori]
FPKM:0.88 TPM:1.17
615 A_BomoN4EE_TR100367_c1_g1_i1
330bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.04 TPM:1.39
616 A_BomoN4EE_TR100368_c0_g1_i1
1792bp
 PREDICTED:_retinol_dehydrogenase_11-like_[Amyelois_transitella]
GO:0001523 P retinoid metabolic process
GO:0001917 C photoreceptor inner segment
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005622 C intracellular anatomical structure
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016062 P adaptation of rhodopsin mediated signaling
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0052650 F NADP-retinol dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:8.27 TPM:11.01
617 A_BomoN4EE_TR100368_c1_g1_i1
279bp
 hypothetical_protein_[Rhizobium_leguminosarum_bv._viciae_3841]
FPKM:0.63 TPM:0.84
618 A_BomoN4EE_TR100369_c1_g1_i1
684bp
 hypothetical_protein_KGM_08437_[Danaus_plexippus]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0016020 C membrane
GO:0042493 P response to xenobiotic stimulus
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:66.97 TPM:89.20
619 A_BomoN4EE_TR100369_c1_g2_i1
414bp
FPKM:0.42 TPM:0.56
620 A_BomoN4EE_TR100369_c1_g3_i1
865bp
 PREDICTED:_probable_NADH_dehydrogenase_[ubiquinone]_iron-sulfur_protein_6,_mitochondrial_[Papilio_polytes]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005747 C mitochondrial respiratory chain complex I
GO:0006120 P mitochondrial electron transport, NADH to ubiquinone
GO:0016020 C membrane
GO:0042493 P response to xenobiotic stimulus
GO:0055114 P obsolete oxidation-reduction process
GO:0070469 C respirasome
FPKM:5.49 TPM:7.31
621 A_BomoN4EE_TR10036_c0_g1_i1
364bp
 hypothetical_protein_D910_05144_[Dendroctonus_ponderosae]
FPKM:0.51 TPM:0.67
622 A_BomoN4EE_TR100370_c0_g1_i1
422bp
 serine_protease_inhibitor_33_precursor_[Bombyx_mori]
FPKM:3.08 TPM:4.10
623 A_BomoN4EE_TR100370_c0_g2_i1
595bp
FPKM:0.77 TPM:1.02
624 A_BomoN4EE_TR100370_c0_g3_i1
340bp
 NADPH_oxidoreductase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
625 A_BomoN4EE_TR100371_c0_g1_i1
452bp
FPKM:0.00 TPM:0.00
626 A_BomoN4EE_TR100371_c0_g2_i1
907bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.53 TPM:0.70
627 A_BomoN4EE_TR100372_c0_g1_i1
2322bp
 olfactory_receptor_[Bombyx_mori]
FPKM:3.72 TPM:4.95
628 A_BomoN4EE_TR100372_c0_g2_i1
2323bp
 olfactory_receptor_[Bombyx_mori]
FPKM:0.22 TPM:0.29
629 A_BomoN4EE_TR100373_c0_g1_i1
347bp
 type_12_methyltransferase_[Paenibacillus_dendritiformis]
FPKM:0.37 TPM:0.50
630 A_BomoN4EE_TR100373_c1_g1_i1
232bp
 cellulose-binding_protein_[[Clostridium]_straminisolvens]
FPKM:0.56 TPM:0.75
previous next from show/144953

- SilkBase 1999-2023 -