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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2011 A_BomoN4EE_TR101247_c0_g2_i1
753bp
 PREDICTED:_uncharacterized_protein_LOC106107340_isoform_X1_[Papilio_polytes]
FPKM:0.00 TPM:0.00
2012 A_BomoN4EE_TR101247_c0_g3_i1
663bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_protein_HIRA_homolog_[Papilio_machaon]
FPKM:4.62 TPM:6.16
2013 A_BomoN4EE_TR101247_c0_g4_i1
2165bp
 PREDICTED:_uncharacterized_protein_LOC106107340_isoform_X1_[Papilio_polytes]
FPKM:3.94 TPM:5.25
2014 A_BomoN4EE_TR101248_c0_g1_i1
921bp
 PREDICTED:_uncharacterized_protein_LOC105842222_isoform_X2_[Bombyx_mori]
FPKM:1.11 TPM:1.49
2015 A_BomoN4EE_TR101249_c0_g1_i1
11169bp
 PREDICTED:_multiple_epidermal_growth_factor-like_domains_protein_8_[Bombyx_mori]
GO:0003143 P embryonic heart tube morphogenesis
GO:0003674 F molecular_function
GO:0005509 F calcium ion binding
GO:0005634 C nucleus
GO:0007368 P determination of left/right symmetry
GO:0010468 P regulation of gene expression
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030326 P embryonic limb morphogenesis
GO:0030509 P BMP signaling pathway
GO:0035108 P limb morphogenesis
GO:0042074 P cell migration involved in gastrulation
GO:0048704 P embryonic skeletal system morphogenesis
GO:0048842 P positive regulation of axon extension involved in axon guidance
GO:0055113 P epiboly involved in gastrulation with mouth forming second
GO:0060971 P embryonic heart tube left/right pattern formation
GO:0060972 P left/right pattern formation
GO:0060976 P coronary vasculature development
GO:0061371 P determination of heart left/right asymmetry
GO:0070062 C extracellular exosome
GO:0071907 P determination of digestive tract left/right asymmetry
GO:0097094 P craniofacial suture morphogenesis
GO:0097155 P fasciculation of sensory neuron axon
FPKM:5.84 TPM:7.78
2016 A_BomoN4EE_TR101249_c0_g1_i2
2931bp
 PREDICTED:_multiple_epidermal_growth_factor-like_domains_protein_8_[Bombyx_mori]
FPKM:5.32 TPM:7.09
2017 A_BomoN4EE_TR10124_c0_g1_i1
608bp
 hypothetical_protein_SORBI_001G026200_[Sorghum_bicolor]
FPKM:0.56 TPM:0.74
2018 A_BomoN4EE_TR101250_c0_g1_i1
246bp
 hypothetical_protein_ACD_17C00333G0001_[uncultured_bacterium]
FPKM:4.06 TPM:5.41
2019 A_BomoN4EE_TR101250_c0_g2_i1
228bp
FPKM:2.71 TPM:3.61
2020 A_BomoN4EE_TR101250_c0_g3_i1
260bp
FPKM:0.00 TPM:0.00
2021 A_BomoN4EE_TR101250_c0_g4_i1
477bp
FPKM:4.45 TPM:5.93
2022 A_BomoN4EE_TR101251_c0_g1_i1
2347bp
 PREDICTED:_ankyrin_repeat_and_zinc_finger_domain-containing_protein_1-like_isoform_X4_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
FPKM:20.80 TPM:27.71
2023 A_BomoN4EE_TR101251_c0_g2_i1
2350bp
 PREDICTED:_ankyrin_repeat_and_zinc_finger_domain-containing_protein_1-like_isoform_X4_[Bombyx_mori]
GO:0004843 F thiol-dependent deubiquitinase
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
FPKM:12.83 TPM:17.09
2024 A_BomoN4EE_TR101251_c1_g1_i1
2537bp
 unknown_[Bombyx_mori]
FPKM:27.26 TPM:36.31
2025 A_BomoN4EE_TR101251_c2_g1_i1
1285bp
 hypothetical_protein_AGABI1DRAFT_130636_[Agaricus_bisporus_var._burnettii_JB137-S8]
FPKM:43.56 TPM:58.02
2026 A_BomoN4EE_TR101252_c0_g1_i1
1438bp
 hypothetical_protein_[Aquimarina_pacifica]
FPKM:3.27 TPM:4.36
2027 A_BomoN4EE_TR101252_c1_g1_i1
1471bp
 PREDICTED:_zinc_finger_protein_OZF-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008150 P biological_process
GO:0046872 F metal ion binding
FPKM:5.81 TPM:7.73
2028 A_BomoN4EE_TR101253_c1_g1_i1
309bp
 putative_DNA-mediated_transposase_[Helicoverpa_zea]
FPKM:0.00 TPM:0.00
2029 A_BomoN4EE_TR101254_c0_g1_i1
2292bp
 PREDICTED:_ATP-binding_cassette_sub-family_A_member_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005319 F lipid transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0044267 P cellular protein metabolic process
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097232 C lamellar body membrane
GO:0097233 C alveolar lamellar body membrane
FPKM:0.00 TPM:0.00
2030 A_BomoN4EE_TR101254_c0_g1_i2
2195bp
 PREDICTED:_ATP-binding_cassette_sub-family_A_member_1-like_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005319 F lipid transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0044267 P cellular protein metabolic process
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097232 C lamellar body membrane
GO:0097233 C alveolar lamellar body membrane
FPKM:0.63 TPM:0.84
2031 A_BomoN4EE_TR101254_c0_g1_i3
2291bp
 ATP-binding_cassette_sub-family_A_ABCA1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005319 F lipid transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0044267 P cellular protein metabolic process
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097232 C lamellar body membrane
GO:0097233 C alveolar lamellar body membrane
FPKM:4.32 TPM:5.76
2032 A_BomoN4EE_TR101255_c0_g1_i1
992bp
FPKM:1.93 TPM:2.57
2033 A_BomoN4EE_TR101255_c0_g2_i1
1212bp
FPKM:3.84 TPM:5.11
2034 A_BomoN4EE_TR101255_c0_g3_i1
332bp
FPKM:0.37 TPM:0.49
2035 A_BomoN4EE_TR101255_c1_g1_i1
239bp
 small_GTP_binding_protein_RAB8_[Bombyx_mori]
FPKM:3.56 TPM:4.74
2036 A_BomoN4EE_TR101255_c2_g1_i1
1986bp
 PREDICTED:_uncharacterized_protein_LOC106139004_[Amyelois_transitella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000077 P DNA damage checkpoint signaling
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016787 F hydrolase activity
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:21.32 TPM:28.40
2037 A_BomoN4EE_TR101255_c2_g1_i2
1747bp
 PREDICTED:_uncharacterized_protein_LOC106139004_[Amyelois_transitella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000077 P DNA damage checkpoint signaling
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016787 F hydrolase activity
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:11.05 TPM:14.72
2038 A_BomoN4EE_TR101255_c3_g1_i1
554bp
FPKM:2.89 TPM:3.85
2039 A_BomoN4EE_TR101256_c0_g1_i1
3615bp
 PREDICTED:_ELMO_domain-containing_protein_2_[Papilio_machaon]
GO:0005096 F GTPase activator activity
GO:0016020 C membrane
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0050688 P regulation of defense response to virus
FPKM:1.05 TPM:1.40
2040 A_BomoN4EE_TR101256_c0_g1_i2
3503bp
 PREDICTED:_ELMO_domain-containing_protein_2_[Papilio_machaon]
GO:0005096 F GTPase activator activity
GO:0016020 C membrane
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0050688 P regulation of defense response to virus
FPKM:0.23 TPM:0.31
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