SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoN4EE_TR101251_c0_g2_i1
Scaffold_idBomo_Chr8
NCBI non-redundant
(nr)		PREDICTED:_ankyrin_repeat_and_zinc_finger_domain-containing_protein_1-like_isoform_X4_[Bombyx_mori]
Ontology
GO:0004843 F thiol-dependent deubiquitinase
GO:0016020 C membrane
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0036266 C Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0046872 F metal ion binding
GO:0071630 P nuclear protein quality control by the ubiquitin-proteasome system
GO:0072671 P mitochondria-associated ubiquitin-dependent protein catabolic process
Transcript
Level		FPKM:12.83 TPM:17.09
ORF EntryO_BomoN4EE51520_complete:A_BomoN4EE_TR101251_c0_g2_i1
Sequence
(Nucleotide)
CTTTAAAGCAACAATGAAACCACTTTATTTATTTATTTATTATATATTTATTTATTTATT
TTTAAGGCACTTTTCCAGTCACGCGCTCATGTTTAGAGGTCGAATGTTTCTGTGGTTCTG
GAGACATTGCACTGCGCAGAATCTGTACACTTCGTACTCGAACGGTTTCTTCGGGAGATT
TGAGCCACAAAGAAAACAACGCTTCTCCGATGACTTCGCCTTTTCGGTATCGGTCATCTG
AAGGAACTTGTTGGTTTTAATCTTCTCCAATTGCTTCTCCTTGTCTCGTTGCCTCTTAGC
TCGTTTCTGTTGTAGCTTCCTCTCTTTCTCTTGTTCCAGAGTCTCGGGGGTCACCGGGCC
GGGAATGTGCGACTTAGCGTAATTGTATTTGTCTGGAAACTGAGCCTGGAACATTCTGAA
GGCGAGGCGTGTCTCCTGGTGTGGCGAGGCCGCGTACGGGGTCTGCAGCTGATTGTTCCT
GATGCACGGATCTCCACCGGCAGTCAGGATCTCAGTGACCATATCTGGTTTCGCAGCAAT
GGCGGCTTTGTGTAGCGCAGTGTTGCCATCGCTAGGATCGCGAGTGTTACAAGCCTCCGC
CAGATTCTCTTCCTCCCAGCCTTCGAATATCGTCTCCAGTGATTTCAATTCATTTCCTAT
TATCATTTTCCACATCTTCTTAATATTATTAGGAATCTTTTGACTGGGCTTGTTAAGAAC
AGCGGGATCTTTTATCTTTTTCCTCCTATCGGTGTCATATTTTTCTTTTACTTCCTGTTT
TAAATCTTCCTTCTCGCTCTCGCAGGGGCTAGGTGTTGACCTATCTTGAATAGCACAATC
GTTTAGGACAACTTTTTTAGAATTAATAATAATCCCACTGGTTTTTTGTTCCGATAGTGT
TTTGATCCAACCTACAGGTGTCTCAGAGTCTATGAAGCAGGGACCTTCGTCTTCGCTCGA
CATCAACTGGGTTGGTAGCTCTCTAGGAGTGCGTTCTCTTGATTTTGCTCTATCAATAGT
TTTACTAGGACTTTTCTTTGCTGTTTTCTTAATATTTTCATTACCAAGATCCAGTGTAGC
TTTATTTGCTGGTTTAGCTGTCGATGTTATCAGTGCTTTTTGGAACAACTCCAACGAATC
GTAAACCTCTAGACTAGCAAGTGTAGAATGAACCCGCTGAACTTCTTTAAATGTAGGTTT
TCTAGTAGGGAAAGGTAGCACTCTAAGTCTTGGATCATCTTTCTTTATAGGGGAGTTCTT
TCCAAATATAGCAGCTTGATTTAAAGATCCTACAGCCCGATATAATATTAGAGAACAACC
TTTGAAGTCTTCTGTCCATTGACTTATAATATCTTGGATATGCTCTAGAAACTGCGCCTG
ATTATATCTTCTAAGGCTAGCACCGGCAGACCTCGCGTGTCCATGATGAGCATCTCTTGT
AGCCTGGGCTTGACCTTGCCCTCTCCTTGTGACATATGAATGAAATGTCTTGTGTAGAAC
TATAGTGCCACCACTGAAAACTGCCCCAGCAAATCTGCCACCCGAGACCATCAGGACTGC
CCATCTTTGATAGCCTGGGATCAATAGCTGCTCCACACGTTCTACCCAGGCACTGCCATC
ACCATCCGTTGATAATTCTTCCTTCTTATGATGTAGGATACATCTATAAATACAGAAGAC
CTGCCCATAATGATTAGTGAAGAACGCCTTGCAATGTCTTGTTGCTGCAGCAAATAGGTC
ACTCGGAGGTCTCTTACTGTCCTCCACTTCTTCCTCAGACTCACTGCTTGATTCATCTAC
TTTCCGAGAATTATACTGGCCAATGGATAATGGAGATTTTCCAAATAGTTTCCTCTTCAA
GTTAAAAGTGTGCCAGTGATGCTTATAATGAGCCGTTTGCTGCGCACGGGTCTCGAATGG
ACCCACTCCGCAACACGAACAACAATTACCATCAGAAGCACCATTTAAGGTTAAAGCATT
AAGGCGACGCAAGACACTCTGTTCATCAATGACATTATGTGATTCTGTTATCATACATGC
TGCCACATGAACACCTTTTAGGAGTTTTTGAAATTCGTCGATCTCATAGACTTTCACGAT
TTTAGTTTTTACTGCCTCGGGCTTCAGCGCCATTATCGGCTCAGATTGTTGATCTTGAAA
TATAATGTCCACGTTTTACATGTTATTACTTAAGTGATACACAATATAATACTTTAATAA
TTGTCTTGGTTGCTTTACCACTCGATAATATTGTGCAACGAGATTAAAAATTTTGCAATA
AGTCAATTAAGTCACTTCACGCTTTGATTTTGAATATGTTCCGATTCTCACGATTTTAGT
TTTTACTGCC
(2350 bp)

- SilkBase 1999-2023 -