SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/37360
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
61 A_TrvaMG_comp1012899_c0_seq1
207bp
PREDICTED:_ATP-dependent_RNA_helicase_abstrakt_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006915 P apoptotic process
GO:0007399 P nervous system development
GO:0008270 F zinc ion binding
GO:0009653 P anatomical structure morphogenesis
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0030010 P establishment of cell polarity
GO:0046872 F metal ion binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
FPKM:1.67 TPM:1.40
62 A_TrvaMG_comp1013015_c0_seq1
225bp
FPKM:0.85 TPM:0.72
63 A_TrvaMG_comp1013065_c0_seq1
245bp
PREDICTED:_laminin_subunit_beta-1_[Bombyx_mori]
GO:0003143 P embryonic heart tube morphogenesis
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005605 C basement membrane
GO:0007155 P cell adhesion
GO:0008406 P gonad development
GO:0009887 P animal organ morphogenesis
GO:0009888 P tissue development
GO:0012505 C endomembrane system
GO:0016477 P cell migration
GO:0030198 P extracellular matrix organization
GO:0031012 C extracellular matrix
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0045089 P positive regulation of innate immune response
GO:0048513 P animal organ development
GO:0048598 P embryonic morphogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0055013 P cardiac muscle cell development
GO:0070831 P basement membrane assembly
FPKM:1.34 TPM:1.13
64 A_TrvaMG_comp1013206_c0_seq1
226bp
Myosin_heavy_chain,_muscle_[Operophtera_brumata]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0001725 C stress fiber
GO:0003009 P skeletal muscle contraction
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005903 C brush border
GO:0007519 P skeletal muscle tissue development
GO:0007605 P sensory perception of sound
GO:0008152 P metabolic process
GO:0008360 P regulation of cell shape
GO:0016020 C membrane
GO:0016459 C myosin complex
GO:0016460 C myosin II complex
GO:0019228 P neuronal action potential
GO:0030048 P actin filament-based movement
GO:0030424 C axon
GO:0030426 C growth cone
GO:0030898 F microfilament motor activity
GO:0031032 P actomyosin structure organization
GO:0042641 C actomyosin
GO:0043209 C myelin sheath
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070584 P mitochondrion morphogenesis
GO:0071625 P vocalization behavior
GO:0097513 C myosin II filament
FPKM:1.68 TPM:1.41
65 A_TrvaMG_comp101320_c0_seq1
368bp
FPKM:11.29 TPM:9.51
66 A_TrvaMG_comp101327_c0_seq1
256bp
FPKM:3.00 TPM:2.52
67 A_TrvaMG_comp1013404_c0_seq1
261bp
PREDICTED:_uncharacterized_protein_LOC101742029_isoform_X2_[Bombyx_mori]
FPKM:1.14 TPM:0.96
68 A_TrvaMG_comp101376_c0_seq1
442bp
FPKM:11.78 TPM:9.92
69 A_TrvaMG_comp1013_c0_seq1
203bp
hypothetical_protein_PPTG_10680_[Phytophthora_parasitica_INRA-310]
FPKM:1.78 TPM:1.50
70 A_TrvaMG_comp1014240_c0_seq1
249bp
PREDICTED:_uncharacterized_protein_LOC101742755_[Bombyx_mori]
GO:0004601 F peroxidase activity
GO:0005576 C extracellular region
GO:0006979 P response to oxidative stress
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0042744 P hydrogen peroxide catabolic process
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0098869 P cellular oxidant detoxification
FPKM:0.96 TPM:0.81
71 A_TrvaMG_comp1014391_c0_seq1
218bp
olfactory_receptor_[Bombyx_mori]
FPKM:1.41 TPM:1.18
72 A_TrvaMG_comp1014870_c0_seq1
250bp
PREDICTED:_ATP_synthase_subunit_s-like_protein_[Atta_cephalotes]
FPKM:0.95 TPM:0.80
73 A_TrvaMG_comp101509_c0_seq1
1071bp
PREDICTED:_uncharacterized_protein_LOC106137299_[Amyelois_transitella]
GO:0006364 P rRNA processing
FPKM:6.82 TPM:5.74
74 A_TrvaMG_comp1015235_c0_seq1
209bp
Adenylate_cyclase_[Operophtera_brumata]
FPKM:1.61 TPM:1.36
75 A_TrvaMG_comp1015293_c0_seq1
277bp
PREDICTED:_piggyBac_transposable_element-derived_protein_3-like_[Papilio_machaon]
FPKM:1.00 TPM:0.84
76 A_TrvaMG_comp10153_c0_seq1
222bp
PREDICTED:_G-protein_coupled_receptor_Mth2-like_[Bombyx_mori]
FPKM:1.33 TPM:1.12
77 A_TrvaMG_comp1015516_c0_seq1
207bp
FPKM:0.56 TPM:0.47
78 A_TrvaMG_comp1015570_c0_seq1
207bp
FPKM:2.22 TPM:1.87
79 A_TrvaMG_comp101567_c0_seq1
511bp
FPKM:5.65 TPM:4.75
80 A_TrvaMG_comp1015709_c0_seq1
246bp
FPKM:1.00 TPM:0.84
81 A_TrvaMG_comp101589_c0_seq1
2977bp
PREDICTED:_H(+)/Cl(-)_exchange_transporter_7_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0003674 F molecular_function
GO:0005216 F ion channel activity
GO:0005247 F voltage-gated chloride channel activity
GO:0005524 F ATP binding
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006821 P chloride transport
GO:0009268 P response to pH
GO:0015297 F antiporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031410 C cytoplasmic vesicle
GO:0034220 P ion transmembrane transport
GO:0055085 P transmembrane transport
GO:1903959 P regulation of anion transmembrane transport
FPKM:6.59 TPM:5.54
82 A_TrvaMG_comp10158_c0_seq1
213bp
PREDICTED:_cytosolic_carboxypeptidase_4-like_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004181 F metallocarboxypeptidase activity
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0015631 F tubulin binding
GO:0016787 F hydrolase activity
GO:0035609 P C-terminal protein deglutamylation
GO:0035610 P protein side chain deglutamylation
GO:0046872 F metal ion binding
FPKM:1.01 TPM:0.85
83 A_TrvaMG_comp1016318_c0_seq1
384bp
FPKM:0.80 TPM:0.67
84 A_TrvaMG_comp1016418_c0_seq1
343bp
PREDICTED:_uncharacterized_protein_LOC101747197_[Bombyx_mori]
FPKM:0.97 TPM:0.82
85 A_TrvaMG_comp1017505_c0_seq1
230bp
FPKM:1.20 TPM:1.01
86 A_TrvaMG_comp1017601_c0_seq1
202bp
FPKM:2.42 TPM:2.04
87 A_TrvaMG_comp1017627_c0_seq1
228bp
FPKM:0.41 TPM:0.34
88 A_TrvaMG_comp1017976_c0_seq1
223bp
PREDICTED:_gastrula_zinc_finger_protein_XlCGF52.1-like_[Papilio_polytes]
FPKM:1.31 TPM:1.10
89 A_TrvaMG_comp1018770_c0_seq1
298bp
PREDICTED:_microtubule-associated_serine/threonine-protein_kinase_3_isoform_X2_[Bombyx_mori]
FPKM:1.06 TPM:0.90
90 A_TrvaMG_comp101889_c0_seq1
680bp
FPKM:7.20 TPM:6.06
previous next from show/37360

- SilkBase 1999-2023 -