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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
301 A_TrvaMG_comp109418_c0_seq1
578bp
U6_snRNA-associated_Sm-like_protein_LSm4_[Operophtera_brumata]
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0002230 P positive regulation of defense response to virus by host
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0097526 C spliceosomal tri-snRNP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
FPKM:8.43 TPM:7.09
302 A_TrvaMG_comp1094335_c0_seq1
309bp
PREDICTED:_probable_serine/threonine-protein_kinase_DDB_G0278845_[Plutella_xylostella]
FPKM:0.59 TPM:0.50
303 A_TrvaMG_comp1094369_c0_seq1
203bp
putative_RNA-directed_DNA_polymerase_from_transposon_BS_[Papilio_xuthus]
FPKM:1.78 TPM:1.50
304 A_TrvaMG_comp1094674_c0_seq1
210bp
serine_protease_inhibitor_11_precursor_[Bombyx_mori]
GO:0004867 F serine-type endopeptidase inhibitor activity
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0010466 P negative regulation of peptidase activity
GO:0010951 P negative regulation of endopeptidase activity
GO:0016020 C membrane
GO:0030414 F peptidase inhibitor activity
GO:0070062 C extracellular exosome
FPKM:1.59 TPM:1.34
305 A_TrvaMG_comp109485_c0_seq1
1145bp
hypothetical_protein_KGM_09534_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005783 C endoplasmic reticulum
GO:0007030 P Golgi organization
GO:0031965 C nuclear membrane
FPKM:6.89 TPM:5.80
306 A_TrvaMG_comp109512_c0_seq1
865bp
FPKM:6.91 TPM:5.82
307 A_TrvaMG_comp1095210_c0_seq1
273bp
farnesyl_diphosphate_synthase_[Strigomonas_culicis]
FPKM:1.03 TPM:0.87
308 A_TrvaMG_comp109533_c0_seq1
440bp
FPKM:6.20 TPM:5.22
309 A_TrvaMG_comp109633_c0_seq1
238bp
plasmid_partitioning_protein_RepA_[Rhizobium_leguminosarum_bv._trifolii_WSM2297]
FPKM:0.36 TPM:0.31
310 A_TrvaMG_comp1096431_c0_seq1
236bp
FPKM:1.48 TPM:1.25
311 A_TrvaMG_comp1096816_c0_seq1
394bp
PREDICTED:_serine-enriched_protein_isoform_X4_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:0.76 TPM:0.64
312 A_TrvaMG_comp1096948_c0_seq1
234bp
FPKM:1.52 TPM:1.28
313 A_TrvaMG_comp109727_c0_seq1
305bp
FPKM:12.98 TPM:10.93
314 A_TrvaMG_comp109837_c0_seq1
2037bp
PREDICTED:_organic_cation_transporter_protein-like_[Papilio_polytes]
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0007390 P germ-band shortening
GO:0008324 F cation transmembrane transporter activity
GO:0015101 F organic cation transmembrane transporter activity
GO:0015695 P organic cation transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0030307 P positive regulation of cell growth
GO:0040018 P positive regulation of multicellular organism growth
GO:0055085 P transmembrane transport
GO:0098655 P cation transmembrane transport
FPKM:5.88 TPM:4.95
315 A_TrvaMG_comp109961_c0_seq1
755bp
PREDICTED:_LOW_QUALITY_PROTEIN:_DNA-directed_RNA_polymerase_III_subunit_RPC8_[Bombyx_mori]
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005666 C RNA polymerase III complex
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0032481 P positive regulation of type I interferon production
GO:0043231 C intracellular membrane-bounded organelle
GO:0045087 P innate immune response
GO:0051607 P defense response to virus
FPKM:6.75 TPM:5.68
316 A_TrvaMG_comp1099933_c0_seq1
225bp
PREDICTED:_transmembrane_protein_80-like_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005929 C cilium
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030030 P cell projection organization
GO:0035869 C ciliary transition zone
GO:0036038 C MKS complex
GO:0042384 P cilium assembly
GO:0042995 C cell projection
GO:0060271 P cilium assembly
FPKM:1.28 TPM:1.07
317 A_TrvaMG_comp110030_c0_seq1
472bp
FPKM:7.01 TPM:5.90
318 A_TrvaMG_comp1101096_c0_seq1
226bp
hypothetical_protein_[Bacillus_sp._TS-2]
FPKM:1.68 TPM:1.41
319 A_TrvaMG_comp110153_c0_seq1
686bp
FPKM:5.62 TPM:4.73
320 A_TrvaMG_comp110204_c0_seq1
3112bp
Uncharacterized_protein_OBRU01_16131_[Operophtera_brumata]
GO:0002088 P lens development in camera-type eye
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007517 P muscle organ development
GO:0007519 P skeletal muscle tissue development
GO:0030018 C Z disc
GO:0030154 P cell differentiation
GO:0030239 P myofibril assembly
GO:0031672 C A band
GO:0048471 C perinuclear region of cytoplasm
GO:0048738 P cardiac muscle tissue development
GO:0048747 P muscle cell development
GO:0060538 P skeletal muscle organ development
FPKM:7.60 TPM:6.40
321 A_TrvaMG_comp1102557_c0_seq1
255bp
FPKM:0.30 TPM:0.25
322 A_TrvaMG_comp110273_c0_seq1
243bp
FPKM:7.20 TPM:6.06
323 A_TrvaMG_comp11032_c0_seq1
261bp
hypothetical_protein_[Chryseobacterium_sp._Hurlbut01]
FPKM:1.14 TPM:0.96
324 A_TrvaMG_comp1103928_c0_seq1
213bp
FPKM:0.50 TPM:0.42
325 A_TrvaMG_comp110393_c0_seq1
1714bp
PREDICTED:_carbonyl_reductase_[NADPH]_2-like_[Bombyx_mori]
GO:0004316 F 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0030497 P fatty acid elongation
GO:0050661 F NADP binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:5.65 TPM:4.75
326 A_TrvaMG_comp1104979_c0_seq1
297bp
cobalamin_adenosyltransferase_[Listeria_monocytogenes]
FPKM:1.28 TPM:1.08
327 A_TrvaMG_comp11053_c0_seq1
221bp
dihydrofolate_reductase_[synthetic_construct]
FPKM:1.35 TPM:1.13
328 A_TrvaMG_comp1106_c0_seq1
201bp
FPKM:1.23 TPM:1.04
329 A_TrvaMG_comp1108207_c0_seq1
242bp
FPKM:1.39 TPM:1.17
330 A_TrvaMG_comp110846_c0_seq1
251bp
PREDICTED:_momilactone_A_synthase-like_[Musa_acuminata_subsp._malaccensis]
FPKM:1.89 TPM:1.59
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