SearchView

Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

1831

A_TrvaMG_comp12201_c0_seq2

680bp

FancJ-like_protein_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0004003	F	DNA helicase activity
GO:0004386	F	helicase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006139	P	nucleobase-containing compound metabolic process
GO:0006281	P	DNA repair
GO:0006357	P	regulation of transcription by RNA polymerase II
GO:0006974	P	cellular response to DNA damage stimulus
GO:0008026	F	helicase activity
GO:0008285	P	negative regulation of cell population proliferation
GO:0016787	F	hydrolase activity
GO:0016818	F	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0031965	C	nuclear membrane
GO:0032508	P	DNA duplex unwinding
GO:0046872	F	metal ion binding
GO:0051536	F	iron-sulfur cluster binding
GO:0051539	F	4 iron, 4 sulfur cluster binding
GO:0071295	P	cellular response to vitamin

FPKM:1.17 TPM:0.99

1832

A_TrvaMG_comp122026_c0_seq1

224bp

FPKM:1.72 TPM:1.45

1833

A_TrvaMG_comp12203_c0_seq1

226bp

FPKM:3.78 TPM:3.18

1834

A_TrvaMG_comp1220443_c0_seq1

213bp

FPKM:1.01 TPM:0.85

1835

A_TrvaMG_comp1220444_c0_seq1

304bp

FPKM:0.61 TPM:0.52

1836

A_TrvaMG_comp1220466_c0_seq1

315bp

PREDICTED:_radial_spoke_head_protein_6_homolog_A_[Bombyx_mori]

GO:0005622

intracellular anatomical structure

FPKM:0.76 TPM:0.64

1837

A_TrvaMG_comp12205_c0_seq1

221bp

FPKM:1.80 TPM:1.51

1838

A_TrvaMG_comp12207_c0_seq1

627bp

PREDICTED:_helicase_ARIP4-like,_partial_[Bombyx_mori]

FPKM:1.36 TPM:1.14

1839

A_TrvaMG_comp122089_c0_seq1

275bp

hypothetical_protein_UW22_C0032G0014_[Candidatus_Gottesmanbacteria_bacterium_GW2011_GWB1_44_11c]

FPKM:10.38 TPM:8.73

1840

A_TrvaMG_comp12208_c0_seq1

739bp

PREDICTED:_uncharacterized_protein_LOC101739253_[Bombyx_mori]

FPKM:1.88 TPM:1.58

1841

A_TrvaMG_comp1220_c0_seq1

250bp

PREDICTED:_gastrula_zinc_finger_protein_XlCGF71.1-like_[Parasteatoda_tepidariorum]

FPKM:1.27 TPM:1.07

1842

A_TrvaMG_comp12210_c0_seq1

969bp

caspase_Nc_[Bombyx_mori]

GO:0001700	P	embryonic development via the syncytial blastoderm
GO:0004175	F	endopeptidase activity
GO:0004197	F	cysteine-type endopeptidase activity
GO:0005515	F	protein binding
GO:0005737	C	cytoplasm
GO:0005739	C	mitochondrion
GO:0006508	P	proteolysis
GO:0006915	P	apoptotic process
GO:0006919	P	activation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0007291	P	sperm individualization
GO:0007417	P	central nervous system development
GO:0007423	P	sensory organ development
GO:0007516	P	hemocyte development
GO:0007552	P	metamorphosis
GO:0008233	F	peptidase activity
GO:0008234	F	cysteine-type peptidase activity
GO:0008258	P	head involution
GO:0008285	P	negative regulation of cell population proliferation
GO:0008340	P	determination of adult lifespan
GO:0010506	P	regulation of autophagy
GO:0010623	P	programmed cell death involved in cell development
GO:0010941	P	regulation of cell death
GO:0012501	P	programmed cell death
GO:0016322	P	neuron remodeling
GO:0016540	P	protein autoprocessing
GO:0016787	F	hydrolase activity
GO:0031638	P	zymogen activation
GO:0035006	P	melanization defense response
GO:0035070	P	salivary gland histolysis
GO:0035071	P	salivary gland cell autophagic cell death
GO:0035234	P	ectopic germ cell programmed cell death
GO:0042803	F	protein homodimerization activity
GO:0043293	C	apoptosome
GO:0045476	P	nurse cell apoptotic process
GO:0046668	P	regulation of retinal cell programmed cell death
GO:0046672	P	positive regulation of compound eye retinal cell programmed cell death
GO:0048102	P	autophagic cell death
GO:0048749	P	compound eye development
GO:0048813	P	dendrite morphogenesis
GO:0050700	F	CARD domain binding
GO:0051291	P	protein heterooligomerization
GO:0097190	P	apoptotic signaling pathway
GO:0097199	F	cysteine-type endopeptidase activity involved in apoptotic signaling pathway
GO:2001269	P	positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway

FPKM:1.24 TPM:1.04

1843

A_TrvaMG_comp12211_c0_seq1

227bp

UPF0414_transmembrane_protein-like_protein_[Operophtera_brumata]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0008150	P	biological_process
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane

FPKM:4.56 TPM:3.84

1844

A_TrvaMG_comp12211_c1_seq1

322bp

UPF0414_transmembrane_protein-like_protein_[Operophtera_brumata]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0008150	P	biological_process
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane

FPKM:2.19 TPM:1.84

1845

A_TrvaMG_comp12212_c0_seq1

289bp

PREDICTED:_LOW_QUALITY_PROTEIN:_nose_resistant_to_fluoxetine_protein_6-like_[Bombyx_mori]

FPKM:1.81 TPM:1.53

1846

A_TrvaMG_comp1221307_c0_seq1

243bp

PREDICTED:_molybdenum_cofactor_biosynthesis_protein_1_isoform_X1_[Amyelois_transitella]

GO:0000166	F	nucleotide binding
GO:0003824	F	catalytic activity
GO:0005525	F	GTP binding
GO:0006777	P	Mo-molybdopterin cofactor biosynthetic process
GO:0016829	F	lyase activity
GO:0019008	C	molybdopterin synthase complex
GO:0032324	P	molybdopterin cofactor biosynthetic process
GO:0046872	F	metal ion binding
GO:0051536	F	iron-sulfur cluster binding
GO:0051539	F	4 iron, 4 sulfur cluster binding
GO:0061597	F	obsolete cyclic pyranopterin monophosphate synthase activity

FPKM:1.03 TPM:0.87

1847

A_TrvaMG_comp12214_c0_seq1

366bp

FPKM:1.44 TPM:1.21

1848

A_TrvaMG_comp12215_c0_seq1

213bp

ribosomal_protein_L24E_[Enterocytozoon_bieneusi_H348]

FPKM:7.57 TPM:6.37

1849

A_TrvaMG_comp1221690_c0_seq1

218bp

FPKM:1.41 TPM:1.18

1850

A_TrvaMG_comp12216_c0_seq1

597bp

T18197_reverse_transcriptase-like_protein_-_silkworm

GO:0003964	F	RNA-directed DNA polymerase activity
GO:0004518	F	nuclease activity
GO:0004519	F	endonuclease activity
GO:0006278	P	RNA-dependent DNA biosynthetic process
GO:0008152	P	metabolic process
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity
GO:0016787	F	hydrolase activity
GO:0046872	F	metal ion binding
GO:0090305	P	nucleic acid phosphodiester bond hydrolysis

FPKM:1.79 TPM:1.51

1851

A_TrvaMG_comp12217_c0_seq1

281bp

PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Bombyx_mori]

GO:0005515	F	protein binding
GO:0005576	C	extracellular region
GO:0005886	C	plasma membrane
GO:0005887	C	integral component of plasma membrane
GO:0007155	P	cell adhesion
GO:0007156	P	homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007162	P	negative regulation of cell adhesion
GO:0007399	P	nervous system development
GO:0007416	P	synapse assembly
GO:0007626	P	locomotory behavior
GO:0010842	P	retina layer formation
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0030054	C	cell junction
GO:0030424	C	axon
GO:0030426	C	growth cone
GO:0042327	P	positive regulation of phosphorylation
GO:0042995	C	cell projection
GO:0045202	C	synapse
GO:0048813	P	dendrite morphogenesis
GO:0048842	P	positive regulation of axon extension involved in axon guidance
GO:0060060	P	post-embryonic retina morphogenesis in camera-type eye
GO:0060219	P	camera-type eye photoreceptor cell differentiation
GO:0070593	P	dendrite self-avoidance