SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/37360
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1471 A_TrvaMG_comp11972_c0_seq1
249bp
FPKM:2.25 TPM:1.89
1472 A_TrvaMG_comp11973_c0_seq1
1455bp
PREDICTED:_MOXD1_homolog_1-like_[Plutella_xylostella]
GO:0003674 F molecular_function
GO:0003824 F catalytic activity
GO:0004497 F monooxygenase activity
GO:0005507 F copper ion binding
GO:0005575 C cellular_component
GO:0005576 C extracellular region
GO:0008150 P biological_process
GO:0016491 F oxidoreductase activity
GO:0016715 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.57 TPM:1.32
1473 A_TrvaMG_comp1197512_c0_seq1
221bp
FPKM:0.90 TPM:0.76
1474 A_TrvaMG_comp1197602_c0_seq1
201bp
FPKM:1.23 TPM:1.04
1475 A_TrvaMG_comp1197607_c0_seq1
238bp
FPKM:1.45 TPM:1.22
1476 A_TrvaMG_comp11976_c0_seq1
399bp
FPKM:3.49 TPM:2.94
1477 A_TrvaMG_comp11977_c0_seq1
245bp
FPKM:3.02 TPM:2.54
1478 A_TrvaMG_comp11978_c0_seq1
470bp
PREDICTED:_DNA_helicase_MCM8_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007292 P female gamete generation
GO:0016787 F hydrolase activity
GO:0048232 P male gamete generation
GO:0097362 C MCM8-MCM9 complex
FPKM:1.93 TPM:1.63
1479 A_TrvaMG_comp1197933_c0_seq1
256bp
PREDICTED:_vacuolar_protein_sorting-associated_protein_13A-like_[Bombyx_mori]
FPKM:0.90 TPM:0.76
1480 A_TrvaMG_comp11979_c0_seq1
437bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_34-like_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:4.43 TPM:3.73
1481 A_TrvaMG_comp11979_c1_seq1
319bp
Ubiquitin_carboxyl-terminal_hydrolase_34_[Papilio_machaon]
FPKM:2.97 TPM:2.50
1482 A_TrvaMG_comp1198020_c0_seq1
214bp
FPKM:1.99 TPM:1.67
1483 A_TrvaMG_comp11980_c0_seq1
312bp
PREDICTED:_microvitellogenin-like,_partial_[Bombyx_mori]
GO:0005576 C extracellular region
FPKM:2.33 TPM:1.96
1484 A_TrvaMG_comp119822_c0_seq1
426bp
FPKM:6.18 TPM:5.20
1485 A_TrvaMG_comp1198497_c0_seq1
234bp
FPKM:0.76 TPM:0.64
1486 A_TrvaMG_comp11984_c0_seq1
1673bp
PREDICTED:_headcase_protein_[Amyelois_transitella]
GO:0002165 P instar larval or pupal development
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0007275 P multicellular organism development
GO:0007424 P open tracheal system development
GO:0007430 P terminal branching, open tracheal system
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0016246 P RNA interference
GO:0022008 P neurogenesis
GO:0030154 P cell differentiation
GO:0030424 C axon
GO:0030425 C dendrite
GO:0035071 P salivary gland cell autophagic cell death
GO:0035147 P branch fusion, open tracheal system
GO:0035155 P negative regulation of terminal cell fate specification, open tracheal system
GO:0048471 C perinuclear region of cytoplasm
GO:0048675 P axon extension
GO:0050768 P negative regulation of neurogenesis
GO:1904799 P regulation of neuron remodeling
FPKM:1.53 TPM:1.28
1487 A_TrvaMG_comp1198614_c0_seq1
220bp
PREDICTED:_crossover_junction_endonuclease_MUS81_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.37 TPM:1.15
1488 A_TrvaMG_comp1198634_c0_seq1
320bp
PREDICTED:_differentially_expressed_in_FDCP_6_homolog_[Fundulus_heteroclitus]
FPKM:0.74 TPM:0.62
1489 A_TrvaMG_comp11986_c0_seq1
428bp
PREDICTED:_lipid_storage_droplets_surface-binding_protein_1_isoform_X2_[Amyelois_transitella]
FPKM:1.67 TPM:1.41
1490 A_TrvaMG_comp11987_c0_seq1
237bp
Chymotrypsin-like_elastase_family_member_2A_[Trichinella_sp._T8]
FPKM:3.30 TPM:2.78
1491 A_TrvaMG_comp1198869_c0_seq1
247bp
FPKM:0.98 TPM:0.83
1492 A_TrvaMG_comp1198885_c0_seq1
217bp
FPKM:1.43 TPM:1.20
1493 A_TrvaMG_comp11988_c0_seq1
406bp
PREDICTED:_uncharacterized_protein_LOC105842730_[Bombyx_mori]
FPKM:1.33 TPM:1.12
1494 A_TrvaMG_comp1198909_c0_seq1
229bp
FPKM:1.21 TPM:1.02
1495 A_TrvaMG_comp11989_c0_seq1
273bp
FPKM:2.36 TPM:1.98
1496 A_TrvaMG_comp11989_c1_seq1
608bp
glutamine_synthetase_catalytic_region_[Firmicutes_bacterium_CAG:475]
FPKM:1.75 TPM:1.47
1497 A_TrvaMG_comp1199016_c0_seq1
206bp
unnamed_protein_product_[Vitis_vinifera]
FPKM:1.13 TPM:0.95
1498 A_TrvaMG_comp11990_c0_seq1
307bp
PREDICTED:_zinc_finger_protein_583-like_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003714 F transcription corepressor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0030331 F estrogen receptor binding
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0043627 P response to estrogen
GO:0046872 F metal ion binding
FPKM:2.20 TPM:1.85
1499 A_TrvaMG_comp11990_c1_seq1
731bp
PREDICTED:_zinc_finger_protein_583-like_isoform_X1_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007281 P germ cell development
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
FPKM:2.49 TPM:2.09
1500 A_TrvaMG_comp1199169_c0_seq1
240bp
FPKM:1.42 TPM:1.19
previous next from show/37360

- SilkBase 1999-2023 -