SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/37360
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1111 A_TrvaMG_comp1176405_c0_seq1
229bp
laminin_B2,_partial_[Papilio_polytes]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005605 C basement membrane
GO:0007155 P cell adhesion
GO:0007435 P salivary gland morphogenesis
GO:0007494 P midgut development
GO:0009887 P animal organ morphogenesis
GO:0009888 P tissue development
GO:0012505 C endomembrane system
GO:0031012 C extracellular matrix
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0048598 P embryonic morphogenesis
GO:0048731 P system development
GO:0061031 P endodermal digestive tract morphogenesis
GO:0070831 P basement membrane assembly
GO:0085029 P extracellular matrix assembly
FPKM:1.21 TPM:1.02
1112 A_TrvaMG_comp11764_c0_seq1
877bp
FPKM:1.77 TPM:1.49
1113 A_TrvaMG_comp11764_c1_seq1
302bp
FPKM:4.35 TPM:3.66
1114 A_TrvaMG_comp11765_c0_seq1
3622bp
PREDICTED:_carboxypeptidase_D_isoform_X3_[Bombyx_mori]
GO:0004180 F carboxypeptidase activity
GO:0004181 F metallocarboxypeptidase activity
GO:0004185 F serine-type carboxypeptidase activity
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0006508 P proteolysis
GO:0006518 P peptide metabolic process
GO:0006909 P phagocytosis
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007616 P long-term memory
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008270 F zinc ion binding
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016485 P protein processing
GO:0016787 F hydrolase activity
GO:0040003 P chitin-based cuticle development
GO:0042302 F structural constituent of cuticle
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
FPKM:1.74 TPM:1.46
1115 A_TrvaMG_comp117661_c0_seq1
962bp
FPKM:6.53 TPM:5.50
1116 A_TrvaMG_comp1176669_c0_seq1
214bp
PREDICTED:_uncharacterized_protein_LOC105381078_[Plutella_xylostella]
FPKM:0.99 TPM:0.84
1117 A_TrvaMG_comp11766_c0_seq1
1209bp
PREDICTED:_gem-associated_protein_5-like_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016604 C nuclear body
GO:0017069 F snRNA binding
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
GO:0044822 F RNA binding
FPKM:2.40 TPM:2.02
1118 A_TrvaMG_comp1176759_c0_seq1
263bp
PREDICTED:_facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
FPKM:1.12 TPM:0.95
1119 A_TrvaMG_comp11767_c0_seq1
540bp
PREDICTED:_uncharacterized_protein_LOC106135609_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0030154 P cell differentiation
FPKM:2.53 TPM:2.13
1120 A_TrvaMG_comp11768_c0_seq1
1481bp
PREDICTED:_protein_enabled_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0035091 F phosphatidylinositol binding
GO:0046872 F metal ion binding
FPKM:2.19 TPM:1.84
1121 A_TrvaMG_comp11768_c0_seq2
1493bp
PREDICTED:_protein_enabled_homolog_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005737 C cytoplasm
GO:0008270 F zinc ion binding
GO:0035091 F phosphatidylinositol binding
GO:0046872 F metal ion binding
FPKM:0.33 TPM:0.28
1122 A_TrvaMG_comp1176966_c0_seq1
206bp
FPKM:1.69 TPM:1.43
1123 A_TrvaMG_comp11770_c0_seq1
3023bp
hypothetical_protein_KGM_17399_[Danaus_plexippus]
GO:0001568 P blood vessel development
GO:0001764 P neuron migration
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005088 F guanyl-nucleotide exchange factor activity
GO:0005096 F GTPase activator activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0007165 P signal transduction
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007218 P neuropeptide signaling pathway
GO:0007264 P small GTPase mediated signal transduction
GO:0007275 P multicellular organism development
GO:0007399 P nervous system development
GO:0008285 P negative regulation of cell population proliferation
GO:0010976 P positive regulation of neuron projection development
GO:0016020 C membrane
GO:0017034 F guanyl-nucleotide exchange factor activity
GO:0019901 F protein kinase binding
GO:0019933 P cAMP-mediated signaling
GO:0021591 P ventricular system development
GO:0021884 P forebrain neuron development
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030165 F PDZ domain binding
GO:0030552 F cAMP binding
GO:0031175 P neuron projection development
GO:0031547 P brain-derived neurotrophic factor receptor signaling pathway
GO:0031697 F beta-1 adrenergic receptor binding
GO:0032092 P positive regulation of protein binding
GO:0032486 P Rap protein signal transduction
GO:0038180 P nerve growth factor signaling pathway
GO:0042127 P regulation of cell population proliferation
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043234 C protein-containing complex
GO:0043547 P positive regulation of GTPase activity
GO:0043950 P positive regulation of cAMP-mediated signaling
GO:0045202 C synapse
GO:0045860 P positive regulation of protein kinase activity
GO:0048022 P negative regulation of melanin biosynthetic process
GO:0048167 P regulation of synaptic plasticity
GO:0048471 C perinuclear region of cytoplasm
GO:0050699 F WW domain binding
GO:0050774 P negative regulation of dendrite morphogenesis
GO:0061028 P establishment of endothelial barrier
GO:0070374 P positive regulation of ERK1 and ERK2 cascade
GO:0071320 P cellular response to cAMP
GO:0071321 P cellular response to cGMP
GO:0071880 P adenylate cyclase-activating adrenergic receptor signaling pathway
GO:1901888 P regulation of cell junction assembly
GO:1990090 P cellular response to nerve growth factor stimulus
GO:2000481 P positive regulation of cAMP-dependent protein kinase activity
GO:2000670 P positive regulation of dendritic cell apoptotic process
GO:2001214 P positive regulation of vasculogenesis
GO:2001224 P positive regulation of neuron migration
FPKM:2.27 TPM:1.91
1124 A_TrvaMG_comp11771_c0_seq1
820bp
FPKM:2.52 TPM:2.12
1125 A_TrvaMG_comp1177243_c0_seq1
261bp
hypothetical_protein_M896_021080_[Ordospora_colligata_OC4]
FPKM:0.57 TPM:0.48
1126 A_TrvaMG_comp11772_c0_seq1
475bp
PREDICTED:_vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:2.66 TPM:2.24
1127 A_TrvaMG_comp11772_c1_seq1
767bp
PREDICTED:_vacuolar_protein_sorting-associated_protein_13D_[Bombyx_mori]
GO:0005622 C intracellular anatomical structure
GO:0006623 P protein targeting to vacuole
GO:0019898 C extrinsic component of membrane
GO:0045053 P protein retention in Golgi apparatus
GO:0070062 C extracellular exosome
FPKM:1.94 TPM:1.63
1128 A_TrvaMG_comp11773_c0_seq1
546bp
FPKM:2.96 TPM:2.49
1129 A_TrvaMG_comp1177418_c0_seq1
285bp
DNA_replication_licensing_factor_MCM6_[Spraguea_lophii_42_110]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006270 P DNA replication initiation
GO:0007049 P cell cycle
GO:0016787 F hydrolase activity
GO:0032508 P DNA duplex unwinding
GO:0042555 C MCM complex
FPKM:0.94 TPM:0.79
1130 A_TrvaMG_comp1177447_c0_seq1
322bp
FPKM:0.73 TPM:0.61
1131 A_TrvaMG_comp11774_c0_seq1
1031bp
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_DGCR14_homolog_[Papilio_polytes]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0007399 P nervous system development
GO:0071013 C catalytic step 2 spliceosome
FPKM:2.09 TPM:1.76
1132 A_TrvaMG_comp11774_c0_seq2
690bp
PREDICTED:_LOW_QUALITY_PROTEIN:_protein_DGCR14_homolog_[Papilio_polytes]
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0007399 P nervous system development
GO:0071013 C catalytic step 2 spliceosome
FPKM:0.00 TPM:0.00
1133 A_TrvaMG_comp1177694_c0_seq1
214bp
PREDICTED:_uncharacterized_protein_LOC101738416_[Bombyx_mori]
FPKM:1.49 TPM:1.26
1134 A_TrvaMG_comp11777_c0_seq1
1072bp
PREDICTED:_FAST_kinase_domain-containing_protein_3-like_[Bombyx_mori]
FPKM:2.23 TPM:1.87
1135 A_TrvaMG_comp1177809_c0_seq1
222bp
FPKM:1.33 TPM:1.12
1136 A_TrvaMG_comp1177829_c0_seq1
214bp
putative_VPS9-ankyrin_repeat-containing_protein_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0042470 C melanosome
FPKM:1.49 TPM:1.26
1137 A_TrvaMG_comp11778_c0_seq1
419bp
FPKM:2.77 TPM:2.33
1138 A_TrvaMG_comp117791_c0_seq1
286bp
FPKM:4.41 TPM:3.71
1139 A_TrvaMG_comp1177961_c0_seq1
278bp
FPKM:0.99 TPM:0.83
1140 A_TrvaMG_comp1178181_c0_seq1
220bp
6-phosphofructokinase_[Nosema_ceranae]
FPKM:1.37 TPM:1.15
previous next from show/37360

- SilkBase 1999-2023 -