SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/38954
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
181 A_ErmoMG_comp118638_c0_seq1
966bp
PREDICTED:_lysM_and_putative_peptidoglycan-binding_domain-containing_protein_3_isoform_X1_[Papilio_polytes]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:5.70 TPM:4.19
182 A_ErmoMG_comp11882_c0_seq1
203bp
FPKM:1.77 TPM:1.30
183 A_ErmoMG_comp118852_c0_seq1
636bp
FPKM:7.01 TPM:5.16
184 A_ErmoMG_comp118868_c0_seq1
384bp
cytochrome-c_oxidase_[Photorhabdus_luminescens]
FPKM:9.20 TPM:6.77
185 A_ErmoMG_comp118873_c0_seq1
1032bp
PREDICTED:_uncharacterized_protein_LOC106812223_[Priapulus_caudatus]
FPKM:7.62 TPM:5.61
186 A_ErmoMG_comp1189789_c0_seq1
228bp
FPKM:1.28 TPM:0.94
187 A_ErmoMG_comp119017_c0_seq1
986bp
PREDICTED:_SAP_domain-containing_ribonucleoprotein_[Amyelois_transitella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000346 C transcription export complex
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006406 P mRNA export from nucleus
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0008022 F protein C-terminus binding
GO:0016607 C nuclear speck
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0050733 F RS domain binding
GO:0051028 P mRNA transport
FPKM:7.99 TPM:5.88
188 A_ErmoMG_comp119081_c0_seq1
487bp
PREDICTED:_39S_ribosomal_protein_L52,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
FPKM:5.50 TPM:4.04
189 A_ErmoMG_comp119226_c0_seq1
299bp
PREDICTED:_zinc_finger_protein_568-like_[Bombyx_mori]
FPKM:3.30 TPM:2.43
190 A_ErmoMG_comp119671_c0_seq1
825bp
FPKM:7.42 TPM:5.46
191 A_ErmoMG_comp119818_c0_seq1
419bp
FPKM:8.58 TPM:6.32
192 A_ErmoMG_comp119912_c0_seq1
274bp
FPKM:7.56 TPM:5.56
193 A_ErmoMG_comp120025_c0_seq1
290bp
FPKM:11.25 TPM:8.28
194 A_ErmoMG_comp12012_c0_seq1
205bp
reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
195 A_ErmoMG_comp120301_c0_seq1
653bp
Mitochondrial_ribosomal_protein_L30_[Operophtera_brumata]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005840 C ribosome
GO:0030529 C ribonucleoprotein complex
GO:0070124 P mitochondrial translational initiation
GO:0070125 P mitochondrial translational elongation
FPKM:6.48 TPM:4.77
196 A_ErmoMG_comp120465_c0_seq1
1223bp
FPKM:4.52 TPM:3.32
197 A_ErmoMG_comp1204694_c0_seq1
227bp
FPKM:1.29 TPM:0.95
198 A_ErmoMG_comp120546_c0_seq1
801bp
FPKM:6.39 TPM:4.70
199 A_ErmoMG_comp120695_c0_seq1
1346bp
FPKM:4.83 TPM:3.55
200 A_ErmoMG_comp120701_c0_seq1
448bp
acriflavine_resistance_protein_B_[Rhodopirellula_maiorica]
FPKM:6.56 TPM:4.83
201 A_ErmoMG_comp120790_c0_seq1
760bp
Ssu72_RNA_polymerase_II_CTD_phosphatase_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
FPKM:7.53 TPM:5.54
202 A_ErmoMG_comp120846_c0_seq1
671bp
PREDICTED:_mitochondrial_import_inner_membrane_translocase_subunit_Tim22_[Papilio_machaon]
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0005744 C TIM23 mitochondrial import inner membrane translocase complex
GO:0006626 P protein targeting to mitochondrion
GO:0006810 P transport
GO:0015031 P protein transport
GO:0015266 F protein transmembrane transporter activity
GO:0015450 F protein-transporting ATPase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030943 F mitochondrion targeting sequence binding
GO:0042721 C TIM22 mitochondrial import inner membrane insertion complex
GO:0045039 P protein insertion into mitochondrial inner membrane
FPKM:7.04 TPM:5.18
203 A_ErmoMG_comp121422_c0_seq1
1227bp
FPKM:3.54 TPM:2.60
204 A_ErmoMG_comp12150_c0_seq1
393bp
FPKM:1.04 TPM:0.76
205 A_ErmoMG_comp121832_c0_seq1
548bp
PREDICTED:_uncharacterized_protein_LOC106129259_[Amyelois_transitella]
FPKM:6.60 TPM:4.85
206 A_ErmoMG_comp121967_c0_seq1
1277bp
hypothetical_protein_KGM_11169_[Danaus_plexippus]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005881 C cytoplasmic microtubule
GO:0035371 C microtubule plus-end
GO:0042599 C lamellar body
GO:0051010 F microtubule plus-end binding
GO:1901588 C dendritic microtubule
FPKM:8.05 TPM:5.92
207 A_ErmoMG_comp12197_c0_seq1
232bp
replication_associated_protein_[Onion_yellows_phytoplasma]
FPKM:1.22 TPM:0.90
208 A_ErmoMG_comp122199_c0_seq1
666bp
FPKM:7.74 TPM:5.70
209 A_ErmoMG_comp122442_c0_seq1
931bp
PREDICTED:_NFU1_iron-sulfur_cluster_scaffold_homolog,_mitochondrial-like_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005506 F iron ion binding
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0008150 P biological_process
GO:0016226 P iron-sulfur cluster assembly
GO:0051536 F iron-sulfur cluster binding
FPKM:6.94 TPM:5.11
210 A_ErmoMG_comp1224516_c0_seq1
237bp
FPKM:1.16 TPM:0.85
previous next from show/38954

- SilkBase 1999-2023 -