SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/43914
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
91 A_BomoMG_comp105641_c0_seq1
297bp
 hypothetical_protein_RR46_14678_[Papilio_xuthus]
FPKM:14.92 TPM:11.78
92 A_BomoMG_comp105751_c0_seq1
212bp
 hypothetical_protein_[Ralstonia_sp._A12]
FPKM:2.68 TPM:2.12
93 A_BomoMG_comp105920_c0_seq1
777bp
FPKM:5.61 TPM:4.43
94 A_BomoMG_comp106098_c0_seq1
548bp
FPKM:6.39 TPM:5.05
95 A_BomoMG_comp106221_c0_seq1
221bp
FPKM:1.00 TPM:0.79
96 A_BomoMG_comp106281_c0_seq1
247bp
 PREDICTED:_centrosomal_protein_of_97_kDa_[Bombyx_mori]
FPKM:1.12 TPM:0.88
97 A_BomoMG_comp106304_c0_seq1
287bp
 Nuclear_hormone_receptor_E75_[Crassostrea_gigas]
FPKM:14.39 TPM:11.37
98 A_BomoMG_comp106338_c0_seq1
578bp
FPKM:7.76 TPM:6.13
99 A_BomoMG_comp106420_c0_seq1
364bp
 acyl-CoA_thioester_hydrolase_[Idiomarina_sp._H105]
FPKM:1.54 TPM:1.22
100 A_BomoMG_comp106474_c0_seq1
899bp
FPKM:8.19 TPM:6.47
101 A_BomoMG_comp106561_c0_seq1
1357bp
 uncharacterized_protein_Dmoj_GI15753_[Drosophila_mojavensis]
FPKM:5.76 TPM:4.55
102 A_BomoMG_comp106575_c0_seq1
542bp
FPKM:7.15 TPM:5.65
103 A_BomoMG_comp106610_c0_seq1
1451bp
 PREDICTED:_metallophosphoesterase_1_homolog_isoform_X2_[Bombyx_mori]
GO:0005793 C endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 C Golgi apparatus
GO:0005801 C cis-Golgi network
GO:0006506 P GPI anchor biosynthetic process
GO:0006810 P transport
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0008081 F phosphoric diester hydrolase activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016192 P vesicle-mediated transport
GO:0016787 F hydrolase activity
GO:0030145 F manganese ion binding
GO:0033116 C endoplasmic reticulum-Golgi intermediate compartment membrane
GO:0034235 F GPI anchor binding
GO:0046872 F metal ion binding
GO:0070971 C endoplasmic reticulum exit site
FPKM:7.37 TPM:5.82
104 A_BomoMG_comp106632_c0_seq1
921bp
 PREDICTED:_maternal_protein_tudor_[Bombyx_mori]
FPKM:5.08 TPM:4.02
105 A_BomoMG_comp106643_c0_seq1
667bp
FPKM:8.00 TPM:6.32
106 A_BomoMG_comp106685_c0_seq1
706bp
 PREDICTED:_talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0002576 P platelet degranulation
GO:0003779 F actin binding
GO:0005178 F integrin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0005925 C focal adhesion
GO:0006928 P movement of cell or subcellular component
GO:0006936 P muscle contraction
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007043 P cell-cell junction assembly
GO:0007044 P cell-substrate junction assembly
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016032 P viral process
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0030274 F LIM domain binding
GO:0030866 P cortical actin cytoskeleton organization
GO:0032403 F protein-containing complex binding
GO:0032587 C ruffle membrane
GO:0036498 P IRE1-mediated unfolded protein response
GO:0042995 C cell projection
GO:0051015 F actin filament binding
GO:0070062 C extracellular exosome
GO:0070527 P platelet aggregation
FPKM:6.84 TPM:5.41
107 A_BomoMG_comp106713_c0_seq1
550bp
 PREDICTED:_titin-like_isoform_X3_[Bombyx_mori]
FPKM:8.30 TPM:6.56
108 A_BomoMG_comp106725_c0_seq1
838bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_sodium_channel_protein_type_4_subunit_alpha_B-like_[Salmo_salar]
FPKM:6.71 TPM:5.30
109 A_BomoMG_comp106853_c0_seq1
914bp
 PREDICTED:_dihydropteridine_reductase_[Papilio_machaon]
GO:0004155 F 6,7-dihydropteridine reductase activity
GO:0005575 C cellular_component
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006729 P tetrahydrobiopterin biosynthetic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
FPKM:6.73 TPM:5.31
110 A_BomoMG_comp106872_c0_seq1
967bp
 PREDICTED:_ribose-5-phosphate_isomerase_[Plutella_xylostella]
GO:0004751 F ribose-5-phosphate isomerase activity
GO:0006098 P pentose-phosphate shunt
GO:0009052 P pentose-phosphate shunt, non-oxidative branch
GO:0016853 F isomerase activity
GO:0019693 P ribose phosphate metabolic process
GO:0030246 F carbohydrate binding
GO:0043231 C intracellular membrane-bounded organelle
GO:0048029 F monosaccharide binding
FPKM:7.38 TPM:5.83
111 A_BomoMG_comp106926_c0_seq1
362bp
 putative_RW1_protein_[Danaus_plexippus]
FPKM:9.00 TPM:7.11
112 A_BomoMG_comp106928_c0_seq1
1062bp
 PREDICTED:_arf-GAP_with_SH3_domain,_ANK_repeat_and_PH_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005737 C cytoplasm
GO:0016020 C membrane
GO:0030030 P cell projection organization
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0060271 P cilium assembly
FPKM:5.92 TPM:4.68
113 A_BomoMG_comp107028_c0_seq1
470bp
FPKM:5.29 TPM:4.18
114 A_BomoMG_comp107065_c0_seq1
1313bp
 PREDICTED:_RNA-binding_protein_34_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0008150 P biological_process
GO:0044822 F RNA binding
FPKM:4.43 TPM:3.50
115 A_BomoMG_comp107076_c0_seq1
706bp
 PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_34-like_[Bombyx_mori]
GO:0000124 C SAGA complex
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0016055 P Wnt signaling pathway
GO:0016578 P histone deubiquitination
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0036459 F thiol-dependent deubiquitinase
GO:0071108 P protein K48-linked deubiquitination
GO:0090263 P positive regulation of canonical Wnt signaling pathway
FPKM:5.65 TPM:4.46
116 A_BomoMG_comp107128_c0_seq1
755bp
 PREDICTED:_MIP18_family_protein_CG7949_[Amyelois_transitella]
GO:0003674 F molecular_function
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0007059 P chromosome segregation
GO:0008150 P biological_process
GO:0016226 P iron-sulfur cluster assembly
FPKM:8.30 TPM:6.56
117 A_BomoMG_comp107141_c0_seq1
503bp
FPKM:6.37 TPM:5.03
118 A_BomoMG_comp107242_c0_seq1
216bp
FPKM:2.68 TPM:2.12
119 A_BomoMG_comp107286_c0_seq1
662bp
FPKM:7.79 TPM:6.15
120 A_BomoMG_comp107289_c0_seq1
469bp
 PREDICTED:_uncharacterized_protein_LOC101747036_[Bombyx_mori]
FPKM:9.47 TPM:7.48
previous next from show/43914

- SilkBase 1999-2023 -