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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
121 A_BomoMG_comp107296_c0_seq1
273bp
 PREDICTED:_nucleolar_complex_protein_3_homolog_[Bombyx_mori]
FPKM:13.03 TPM:10.30
122 A_BomoMG_comp107383_c0_seq1
1040bp
 PREDICTED:_synaptic_vesicle_glycoprotein_2C-like_[Bombyx_mori]
GO:0001669 C acrosomal vesicle
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0008021 C synaptic vesicle
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0030054 C cell junction
GO:0030672 C synaptic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0045202 C synapse
GO:0055085 P transmembrane transport
FPKM:5.65 TPM:4.46
123 A_BomoMG_comp107416_c0_seq1
609bp
FPKM:5.23 TPM:4.13
124 A_BomoMG_comp10742_c0_seq1
213bp
 Potassium_voltage-gated_channel_subfamily_H_member_1_[Papilio_xuthus]
FPKM:1.68 TPM:1.33
125 A_BomoMG_comp107694_c0_seq1
827bp
 PREDICTED:_MIT_domain-containing_protein_1-like_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0000920 P septum digestion after cytokinesis
GO:0005768 C endosome
GO:0006810 P transport
GO:0007049 P cell cycle
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0019904 F protein domain specific binding
GO:0030496 C midbody
GO:0031902 C late endosome membrane
GO:0032091 P negative regulation of protein binding
GO:0035091 F phosphatidylinositol binding
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0051301 P cell division
GO:0070062 C extracellular exosome
FPKM:2.95 TPM:2.33
126 A_BomoMG_comp107757_c0_seq1
1029bp
FPKM:7.99 TPM:6.32
127 A_BomoMG_comp107927_c0_seq1
826bp
 Oxidative_stress-induced_growth_inhibitor_1_[Papilio_machaon]
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0007275 P multicellular organism development
GO:0008083 F growth factor activity
GO:0016491 F oxidoreductase activity
GO:0030154 P cell differentiation
GO:0030308 P negative regulation of cell growth
GO:0040008 P regulation of growth
GO:0043065 P positive regulation of apoptotic process
GO:0055114 P obsolete oxidation-reduction process
FPKM:6.72 TPM:5.31
128 A_BomoMG_comp1080127_c0_seq1
204bp
FPKM:1.28 TPM:1.01
129 A_BomoMG_comp108061_c0_seq1
394bp
FPKM:7.53 TPM:5.95
130 A_BomoMG_comp108141_c0_seq1
2709bp
FPKM:5.40 TPM:4.27
131 A_BomoMG_comp108161_c0_seq1
268bp
 PREDICTED:_protein_FAM214A_isoform_X1_[Amyelois_transitella]
GO:0005515 F protein binding
FPKM:20.05 TPM:15.84
132 A_BomoMG_comp108296_c0_seq1
950bp
 PREDICTED:_U1_small_nuclear_ribonucleoprotein_A_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0007539 P primary sex determination, soma
GO:0008266 F poly(U) RNA binding
GO:0008380 P RNA splicing
GO:0017069 F snRNA binding
GO:0019099 P female germ-line sex determination
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0035614 F snRNA stem-loop binding
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097158 F pre-mRNA intronic pyrimidine-rich binding
FPKM:6.98 TPM:5.51
133 A_BomoMG_comp108327_c0_seq1
212bp
 D-alanyl-D-alanine_carboxypeptidase_family_protein_[Tetrahymena_thermophila_SB210]
FPKM:5.68 TPM:4.49
134 A_BomoMG_comp108331_c0_seq1
362bp
 PREDICTED:_uncharacterized_protein_LOC101744165_[Bombyx_mori]
FPKM:7.63 TPM:6.02
135 A_BomoMG_comp108357_c0_seq1
1840bp
 PREDICTED:_E3_ubiquitin-protein_ligase_UBR3_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0001701 P in utero embryonic development
GO:0001967 P suckling behavior
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007608 P sensory perception of smell
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042048 P olfactory behavior
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
FPKM:5.56 TPM:4.40
136 A_BomoMG_comp108362_c0_seq1
284bp
 slc24a-1_[Schmidtea_mediterranea]
FPKM:10.07 TPM:7.96
137 A_BomoMG_comp108363_c0_seq1
896bp
FPKM:7.09 TPM:5.60
138 A_BomoMG_comp108486_c0_seq1
1067bp
 PREDICTED:_ribosome_production_factor_2_homolog_[Papilio_xuthus]
GO:0000027 P ribosomal large subunit assembly
GO:0000463 P maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0019843 F rRNA binding
GO:0022008 P neurogenesis
GO:0051301 P cell division
GO:0090307 P mitotic spindle assembly
FPKM:5.77 TPM:4.56
139 A_BomoMG_comp108511_c0_seq1
814bp
 juvenile_hormone_esterase_binding_protein_[Bombyx_mori]
GO:0005739 C mitochondrion
FPKM:8.01 TPM:6.33
140 A_BomoMG_comp108633_c0_seq1
475bp
FPKM:7.48 TPM:5.91
141 A_BomoMG_comp108647_c0_seq1
290bp
FPKM:4.69 TPM:3.71
142 A_BomoMG_comp108667_c0_seq1
289bp
 beta''_subunit_of_RNA_polymerase_(chloroplast)_[Botryococcus_braunii]
FPKM:4.47 TPM:3.53
143 A_BomoMG_comp108815_c0_seq1
403bp
 PREDICTED:_pecanex-like_protein_1_[Bombyx_mori]
FPKM:7.41 TPM:5.86
144 A_BomoMG_comp108917_c0_seq1
1928bp
 PREDICTED:_ras-related_protein_Rab-9A_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006913 P nucleocytoplasmic transport
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019003 F GDP binding
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032880 P regulation of protein localization
GO:0042147 P retrograde transport, endosome to Golgi
GO:0045335 C phagocytic vesicle
GO:0045921 P positive regulation of exocytosis
GO:0052405 P negative regulation by host of symbiont catalytic activity
GO:0070062 C extracellular exosome
FPKM:4.98 TPM:3.93
145 A_BomoMG_comp109028_c0_seq1
1000bp
 surfeit_1_isoform_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0004129 F cytochrome-c oxidase activity
GO:0005575 C cellular_component
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006119 P oxidative phosphorylation
GO:0006754 P ATP biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:1902600 P proton transmembrane transport
FPKM:7.35 TPM:5.81
146 A_BomoMG_comp109098_c0_seq1
594bp
 ubiquitin-related_modifier_1_homolog_[Bombyx_mori]
GO:0002098 P tRNA wobble uridine modification
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0032447 P protein urmylation
GO:0034227 P tRNA thio-modification
FPKM:6.98 TPM:5.51
147 A_BomoMG_comp109450_c0_seq1
2162bp
 PREDICTED:_myb-like_protein_X_[Bombyx_mori]
FPKM:6.15 TPM:4.86
148 A_BomoMG_comp109493_c0_seq1
399bp
 PREDICTED:_AP-3_complex_subunit_beta-2_[Bombyx_mori]
FPKM:11.66 TPM:9.22
149 A_BomoMG_comp109547_c0_seq1
391bp
 PREDICTED:_uncharacterized_protein_LOC101744165_[Bombyx_mori]
FPKM:2.59 TPM:2.05
150 A_BomoMG_comp109704_c0_seq1
688bp
FPKM:6.18 TPM:4.88
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