SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/43914
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2701 A_BomoMG_comp18306_c0_seq1
344bp
 PREDICTED:_peptidoglycan_recognition_protein-like_isoform_X2_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0005887 C integral component of plasma membrane
GO:0006952 P defense response
GO:0006955 P immune response
GO:0008270 F zinc ion binding
GO:0008745 F N-acetylmuramoyl-L-alanine amidase activity
GO:0009253 P peptidoglycan catabolic process
GO:0016787 F hydrolase activity
GO:0042834 F peptidoglycan binding
GO:0045087 P innate immune response
GO:0045824 P negative regulation of innate immune response
GO:0046872 F metal ion binding
FPKM:1.89 TPM:1.49
2702 A_BomoMG_comp18306_c1_seq1
404bp
 PREDICTED:_peptidoglycan_recognition_protein-like_isoform_X2_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005576 C extracellular region
GO:0008270 F zinc ion binding
GO:0008745 F N-acetylmuramoyl-L-alanine amidase activity
GO:0009253 P peptidoglycan catabolic process
GO:0016787 F hydrolase activity
GO:0045087 P innate immune response
GO:0046872 F metal ion binding
FPKM:2.46 TPM:1.94
2703 A_BomoMG_comp18307_c0_seq1
302bp
 multidrug_and_toxin_extrusion_(MATE)_family_efflux_pump_YdhE/NorM_homolog_[Jejuia_pallidilutea]
FPKM:2.89 TPM:2.28
2704 A_BomoMG_comp18307_c1_seq1
309bp
FPKM:1.61 TPM:1.27
2705 A_BomoMG_comp18309_c0_seq1
333bp
 PREDICTED:_src-like-adapter_2_[Austrofundulus_limnaeus]
FPKM:1.20 TPM:0.95
2706 A_BomoMG_comp18310_c0_seq1
275bp
 hypothetical_protein_[Verrucomicrobium_spinosum]
FPKM:2.04 TPM:1.61
2707 A_BomoMG_comp183119_c0_seq1
525bp
FPKM:3.83 TPM:3.03
2708 A_BomoMG_comp18311_c0_seq1
606bp
FPKM:1.54 TPM:1.21
2709 A_BomoMG_comp18313_c0_seq1
235bp
FPKM:2.54 TPM:2.01
2710 A_BomoMG_comp18313_c1_seq1
231bp
FPKM:1.77 TPM:1.40
2711 A_BomoMG_comp18316_c0_seq1
206bp
FPKM:0.62 TPM:0.49
2712 A_BomoMG_comp18316_c1_seq1
289bp
 Uncharacterised_protein_[Serratia]
FPKM:1.84 TPM:1.45
2713 A_BomoMG_comp18317_c0_seq1
230bp
 hypothetical_protein_KGM_13986_[Danaus_plexippus]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005902 C microvillus
GO:0005903 C brush border
GO:0007605 P sensory perception of sound
GO:0008152 P metabolic process
GO:0009925 C basal plasma membrane
GO:0016323 C basolateral plasma membrane
GO:0016324 C apical plasma membrane
GO:0016328 C lateral plasma membrane
GO:0016459 C myosin complex
GO:0030030 P cell projection organization
GO:0030033 P microvillus assembly
GO:0030864 C cortical actin cytoskeleton
GO:0031941 C filamentous actin
GO:0044853 C plasma membrane raft
GO:0051015 F actin filament binding
GO:0051648 P vesicle localization
FPKM:2.24 TPM:1.77
2714 A_BomoMG_comp18320_c0_seq1
276bp
 hypothetical_protein_RR46_14093_[Papilio_xuthus]
FPKM:1.45 TPM:1.14
2715 A_BomoMG_comp18321_c0_seq1
259bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:1.33 TPM:1.05
2716 A_BomoMG_comp183228_c0_seq1
448bp
FPKM:2.59 TPM:2.05
2717 A_BomoMG_comp18322_c0_seq1
203bp
FPKM:2.61 TPM:2.06
2718 A_BomoMG_comp18324_c0_seq1
410bp
FPKM:1.70 TPM:1.34
2719 A_BomoMG_comp18325_c0_seq1
277bp
 PREDICTED:_synaptic_vesicle_2-related_protein-like_[Amyelois_transitella]
FPKM:1.15 TPM:0.91
2720 A_BomoMG_comp18326_c0_seq1
408bp
 PREDICTED:_ELAV-like_protein_1_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0007275 P multicellular organism development
GO:0030529 C ribonucleoprotein complex
FPKM:1.71 TPM:1.35
2721 A_BomoMG_comp183274_c0_seq1
410bp
 Pc18g01410_[Penicillium_rubens_Wisconsin_54-1255]
FPKM:3.11 TPM:2.46
2722 A_BomoMG_comp18327_c0_seq1
247bp
 PREDICTED:_microtubule-associated_protein_futsch-like_[Bombyx_mori]
FPKM:2.98 TPM:2.36
2723 A_BomoMG_comp18328_c0_seq1
211bp
FPKM:2.88 TPM:2.28
2724 A_BomoMG_comp18330_c0_seq1
319bp
 PREDICTED:_uncharacterized_protein_LOC105363384_isoform_X1_[Ceratosolen_solmsi_marchali]
FPKM:1.73 TPM:1.37
2725 A_BomoMG_comp18333_c0_seq1
205bp
 hypothetical_protein_TKV_c06240_[Thermoanaerobacter_kivui]
FPKM:3.16 TPM:2.49
2726 A_BomoMG_comp18333_c1_seq1
324bp
FPKM:2.11 TPM:1.66
2727 A_BomoMG_comp183343_c0_seq1
476bp
FPKM:4.29 TPM:3.39
2728 A_BomoMG_comp18337_c0_seq1
372bp
 PREDICTED:_serine/threonine-protein_kinase_NLK_isoform_X1_[Amyelois_transitella]
GO:0000165 P MAPK cascade
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004707 F MAP kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006468 P protein phosphorylation
GO:0007179 P transforming growth factor beta receptor signaling pathway
GO:0008134 F transcription factor binding
GO:0016055 P Wnt signaling pathway
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018107 P peptidyl-threonine phosphorylation
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0031625 F ubiquitin protein ligase binding
GO:0033136 P serine phosphorylation of STAT protein
GO:0035556 P intracellular signal transduction
GO:0042169 F SH2 domain binding
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0050821 P protein stabilization
FPKM:1.65 TPM:1.31
2729 A_BomoMG_comp183403_c0_seq1
210bp
FPKM:2.92 TPM:2.31
2730 A_BomoMG_comp18340_c0_seq1
237bp
 PREDICTED:_CDK5_and_ABL1_enzyme_substrate_2_isoform_X2_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007049 P cell cycle
GO:0007399 P nervous system development
GO:0007596 P blood coagulation
GO:0030426 C growth cone
GO:0042995 C cell projection
GO:0051301 P cell division
GO:0051726 P regulation of cell cycle
FPKM:2.48 TPM:1.96
previous next from show/43914

- SilkBase 1999-2023 -