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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1591 A_BomoMG_comp17174_c0_seq1
313bp
 PREDICTED:_zinc_finger_protein_239-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0010629 P negative regulation of gene expression
GO:0032728 P positive regulation of interferon-beta production
GO:0032755 P positive regulation of interleukin-6 production
GO:0032760 P positive regulation of tumor necrosis factor production
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:0.76 TPM:0.60
1592 A_BomoMG_comp17174_c0_seq2
252bp
 PREDICTED:_zinc_finger_protein_239-like_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
FPKM:2.00 TPM:1.58
1593 A_BomoMG_comp17175_c0_seq1
567bp
 PREDICTED:_twitchin_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0031672 C A band
GO:0046872 F metal ion binding
GO:0051782 P negative regulation of cell division
FPKM:1.77 TPM:1.40
1594 A_BomoMG_comp17176_c0_seq1
352bp
 heme_d1_biosynthesis_radical_SAM_protein_NirJ_[Cupriavidus_sp._IDO]
FPKM:2.00 TPM:1.58
1595 A_BomoMG_comp171785_c0_seq1
436bp
 PREDICTED:_exonuclease_3'-5'_domain-containing_protein_2_[Papilio_machaon]
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006259 P DNA metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0008852 F exodeoxyribonuclease I activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.22 TPM:2.54
1596 A_BomoMG_comp17178_c0_seq1
229bp
 PREDICTED:_uncharacterized_protein_LOC105842187_[Bombyx_mori]
FPKM:2.72 TPM:2.15
1597 A_BomoMG_comp17179_c0_seq1
252bp
FPKM:3.91 TPM:3.09
1598 A_BomoMG_comp171809_c0_seq1
393bp
 hypothetical_protein_[Klebsiella_sp._10982]
FPKM:4.11 TPM:3.25
1599 A_BomoMG_comp17180_c0_seq1
216bp
 PREDICTED:_uncharacterized_protein_LOC106113371_isoform_X1_[Papilio_xuthus]
FPKM:3.75 TPM:2.97
1600 A_BomoMG_comp171813_c0_seq1
360bp
 FCD_domain_protein_[Burkholderia_cenocepacia_K56-2Valvano]
FPKM:4.89 TPM:3.87
1601 A_BomoMG_comp171816_c0_seq1
966bp
 PREDICTED:_protein_MAK16_homolog_A_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005730 C nucleolus
FPKM:3.76 TPM:2.97
1602 A_BomoMG_comp171817_c0_seq1
1377bp
 PREDICTED:_zinc_finger_protein_454-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:3.17 TPM:2.50
1603 A_BomoMG_comp171818_c0_seq1
610bp
 PREDICTED:_uncharacterized_protein_LOC101739253_[Bombyx_mori]
FPKM:4.01 TPM:3.17
1604 A_BomoMG_comp17181_c0_seq1
1240bp
 PREDICTED:_uncharacterized_protein_LOC101744657_[Bombyx_mori]
FPKM:1.83 TPM:1.45
1605 A_BomoMG_comp17181_c1_seq1
504bp
 PREDICTED:_uncharacterized_protein_LOC101744657_[Bombyx_mori]
FPKM:2.50 TPM:1.97
1606 A_BomoMG_comp17182_c0_seq1
488bp
 PREDICTED:_oocyte_zinc_finger_protein_XlCOF6-like_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.53 TPM:1.21
1607 A_BomoMG_comp17183_c0_seq1
210bp
FPKM:2.92 TPM:2.31
1608 A_BomoMG_comp17183_c1_seq1
265bp
FPKM:1.90 TPM:1.50
1609 A_BomoMG_comp171848_c0_seq1
667bp
FPKM:4.00 TPM:3.16
1610 A_BomoMG_comp17184_c0_seq1
353bp
FPKM:1.99 TPM:1.57
1611 A_BomoMG_comp171853_c0_seq1
516bp
 PREDICTED:_uncharacterized_protein_LOC106106238_[Papilio_polytes]
FPKM:4.53 TPM:3.58
1612 A_BomoMG_comp171857_c0_seq1
614bp
FPKM:4.53 TPM:3.58
1613 A_BomoMG_comp17185_c0_seq1
414bp
 dihydroxy-acid_dehydratase_[Advenella_mimigardefordensis]
FPKM:1.67 TPM:1.32
1614 A_BomoMG_comp171864_c0_seq1
582bp
FPKM:3.76 TPM:2.97
1615 A_BomoMG_comp17186_c0_seq1
454bp
 Zinc_finger_protein_782_[Papilio_machaon]
FPKM:1.70 TPM:1.34
1616 A_BomoMG_comp171873_c0_seq1
587bp
FPKM:2.45 TPM:1.93
1617 A_BomoMG_comp17190_c0_seq1
317bp
 chorion_HcA_[Bombyx_mori]
FPKM:2.41 TPM:1.91
1618 A_BomoMG_comp17193_c0_seq1
428bp
 PREDICTED:_uncharacterized_protein_LOC106142941_[Amyelois_transitella]
FPKM:1.99 TPM:1.57
1619 A_BomoMG_comp17196_c0_seq1
349bp
FPKM:2.03 TPM:1.60
1620 A_BomoMG_comp17196_c0_seq2
284bp
FPKM:0.00 TPM:0.00
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