SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/43914
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1441 A_BomoMG_comp170085_c0_seq1
2583bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_circadian_locomoter_output_cycles_protein_kaput_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003053 P circadian regulation of heart rate
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007622 P rhythmic behavior
GO:0007623 P circadian rhythm
GO:0008062 P eclosion rhythm
GO:0008134 F transcription factor binding
GO:0009266 P response to temperature stimulus
GO:0009649 P entrainment of circadian clock
GO:0032922 P circadian regulation of gene expression
GO:0043066 P negative regulation of apoptotic process
GO:0045187 P regulation of circadian sleep/wake cycle, sleep
GO:0045475 P locomotor rhythm
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
GO:0046983 F protein dimerization activity
GO:0048148 P behavioral response to cocaine
GO:0048511 P rhythmic process
FPKM:3.36 TPM:2.66
1442 A_BomoMG_comp17008_c0_seq1
215bp
FPKM:1.09 TPM:0.86
1443 A_BomoMG_comp17010_c0_seq1
829bp
 hypothetical_protein_[Bacillus_cereus]
FPKM:1.90 TPM:1.50
1444 A_BomoMG_comp170116_c0_seq1
279bp
FPKM:2.54 TPM:2.01
1445 A_BomoMG_comp17011_c0_seq1
214bp
 hypothetical_protein_[Sphingobacterium_thalpophilum]
FPKM:6.62 TPM:5.23
1446 A_BomoMG_comp17012_c0_seq1
1391bp
 PREDICTED:_bromodomain-containing_protein_DDB_G0280777-like_[Amyelois_transitella]
FPKM:1.67 TPM:1.32
1447 A_BomoMG_comp17012_c0_seq2
1352bp
 PREDICTED:_bromodomain-containing_protein_DDB_G0280777-like_[Amyelois_transitella]
FPKM:0.00 TPM:0.00
1448 A_BomoMG_comp17014_c0_seq1
318bp
 PREDICTED:_midasin_isoform_X1_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006461 P protein-containing complex assembly
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045111 C intermediate filament cytoskeleton
GO:0051082 F unfolded protein binding
FPKM:4.36 TPM:3.44
1449 A_BomoMG_comp17014_c1_seq1
562bp
 PREDICTED:_midasin_isoform_X1_[Bombyx_mori]
GO:0000027 P ribosomal large subunit assembly
GO:0000166 F nucleotide binding
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006461 P protein-containing complex assembly
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016887 F ATP hydrolysis activity
GO:0045111 C intermediate filament cytoskeleton
GO:0051082 F unfolded protein binding
FPKM:2.24 TPM:1.77
1450 A_BomoMG_comp170164_c0_seq1
214bp
 PREDICTED:_uncharacterized_protein_LOC105203359,_partial_[Solenopsis_invicta]
FPKM:7.72 TPM:6.10
1451 A_BomoMG_comp17016_c0_seq1
548bp
 Essential_protein_involved_in_nuclear_export_of_Mss4p_[Komagataella_phaffii_GS115]
FPKM:2.69 TPM:2.12
1452 A_BomoMG_comp17017_c0_seq1
1096bp
 PREDICTED:_filamin-A_isoform_X1_[Bombyx_mori]
GO:0001725 C stress fiber
GO:0003334 P keratinocyte development
GO:0003382 P epithelial cell morphogenesis
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005903 C brush border
GO:0005925 C focal adhesion
GO:0005938 C cell cortex
GO:0007519 P skeletal muscle tissue development
GO:0030018 C Z disc
GO:0030036 P actin cytoskeleton organization
GO:0030154 P cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:1.88 TPM:1.48
1453 A_BomoMG_comp17018_c0_seq1
372bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_protein_split_ends_[Bombyx_mori]
FPKM:2.48 TPM:1.96
1454 A_BomoMG_comp17019_c0_seq1
1186bp
 putative_laminin_A_chain_[Danaus_plexippus]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005605 C basement membrane
GO:0007155 P cell adhesion
GO:0007435 P salivary gland morphogenesis
GO:0007494 P midgut development
GO:0009887 P animal organ morphogenesis
GO:0009888 P tissue development
GO:0012505 C endomembrane system
GO:0031012 C extracellular matrix
GO:0033627 P cell adhesion mediated by integrin
GO:0034446 P substrate adhesion-dependent cell spreading
GO:0048598 P embryonic morphogenesis
GO:0048731 P system development
GO:0061031 P endodermal digestive tract morphogenesis
GO:0070831 P basement membrane assembly
GO:0085029 P extracellular matrix assembly
FPKM:1.79 TPM:1.41
1455 A_BomoMG_comp17020_c0_seq1
312bp
FPKM:4.07 TPM:3.21
1456 A_BomoMG_comp17021_c0_seq1
294bp
 putative_f-box_protein_[Danaus_plexippus]
FPKM:1.27 TPM:1.00
1457 A_BomoMG_comp17021_c0_seq2
440bp
 PREDICTED:_F-box_only_protein_42_[Amyelois_transitella]
FPKM:1.39 TPM:1.10
1458 A_BomoMG_comp170223_c0_seq1
438bp
 PREDICTED:_centaurin-gamma-1A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005096 F GTPase activator activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0043087 P regulation of GTPase activity
GO:0043547 P positive regulation of GTPase activity
GO:0046872 F metal ion binding
GO:0072375 P medium-term memory
FPKM:3.83 TPM:3.03
1459 A_BomoMG_comp17024_c0_seq1
492bp
FPKM:2.48 TPM:1.96
1460 A_BomoMG_comp17025_c0_seq1
436bp
FPKM:2.70 TPM:2.13
1461 A_BomoMG_comp17027_c0_seq1
224bp
 Rho_GTPase-activating_protein_190_[Papilio_machaon]
FPKM:3.86 TPM:3.05
1462 A_BomoMG_comp17031_c0_seq1
349bp
 PREDICTED:_uncharacterized_protein_LOC105841590_isoform_X1_[Bombyx_mori]
FPKM:3.13 TPM:2.48
1463 A_BomoMG_comp170320_c0_seq1
305bp
 hypothetical_protein_[Pedobacter_kyungheensis]
FPKM:3.54 TPM:2.80
1464 A_BomoMG_comp17033_c0_seq1
393bp
FPKM:2.12 TPM:1.67
1465 A_BomoMG_comp17034_c0_seq1
446bp
 PREDICTED:_nuclear_pore_complex_protein_Nup153-like_[Bombyx_mori]
FPKM:2.98 TPM:2.36
1466 A_BomoMG_comp17035_c0_seq1
586bp
 PREDICTED:_peripheral_plasma_membrane_protein_CASK_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004683 F calmodulin-dependent protein kinase activity
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005954 C calcium- and calmodulin-dependent protein kinase complex
GO:0006468 P protein phosphorylation
GO:0007155 P cell adhesion
GO:0007163 P establishment or maintenance of cell polarity
GO:0007269 P neurotransmitter secretion
GO:0007274 P neuromuscular synaptic transmission
GO:0007298 P border follicle cell migration
GO:0007615 P anesthesia-resistant memory
GO:0007616 P long-term memory
GO:0007628 P adult walking behavior
GO:0008049 P male courtship behavior
GO:0008344 P adult locomotory behavior
GO:0008360 P regulation of cell shape
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0016020 C membrane
GO:0016080 P synaptic vesicle targeting
GO:0016081 P synaptic vesicle docking
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019233 P sensory perception of pain
GO:0031594 C neuromuscular junction
GO:0040011 P locomotion
GO:0040012 P regulation of locomotion
GO:0042043 F neurexin family protein binding
GO:0046331 P lateral inhibition
GO:0046928 P regulation of neurotransmitter secretion
GO:0048488 P synaptic vesicle endocytosis
GO:0061174 C type I terminal bouton
GO:0072375 P medium-term memory
GO:1900073 P regulation of neuromuscular synaptic transmission
GO:1900244 P positive regulation of synaptic vesicle endocytosis
GO:2000331 P regulation of terminal button organization
FPKM:2.28 TPM:1.81
1467 A_BomoMG_comp17036_c0_seq1
668bp
FPKM:2.35 TPM:1.86
1468 A_BomoMG_comp17038_c0_seq1
259bp
FPKM:3.67 TPM:2.90
1469 A_BomoMG_comp170396_c0_seq1
491bp
 PREDICTED:_uncharacterized_protein_LOC106134630_[Amyelois_transitella]
FPKM:3.57 TPM:2.82
1470 A_BomoMG_comp17039_c0_seq1
351bp
FPKM:2.01 TPM:1.59
previous next from show/43914

- SilkBase 1999-2023 -