SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/43914
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1381 A_BomoMG_comp16924_c0_seq1
354bp
 beta-carotene_15,15'-monooxygenase_[Streptococcus_sanguinis]
FPKM:2.52 TPM:1.99
1382 A_BomoMG_comp16927_c0_seq1
332bp
 hypothetical_protein_THII_2436_[Thioploca_ingrica]
FPKM:2.01 TPM:1.59
1383 A_BomoMG_comp16929_c0_seq1
352bp
 Bm8_interacting_protein_2d-2_[Bombyx_mori]
FPKM:2.54 TPM:2.01
1384 A_BomoMG_comp16933_c0_seq1
625bp
FPKM:1.63 TPM:1.29
1385 A_BomoMG_comp16934_c0_seq1
398bp
FPKM:2.82 TPM:2.23
1386 A_BomoMG_comp16935_c0_seq1
212bp
FPKM:1.70 TPM:1.35
1387 A_BomoMG_comp169366_c0_seq1
620bp
FPKM:3.45 TPM:2.73
1388 A_BomoMG_comp16938_c0_seq1
294bp
 predicted_protein_[Trichoderma_reesei_QM6a]
FPKM:2.54 TPM:2.00
1389 A_BomoMG_comp16939_c0_seq1
395bp
FPKM:2.10 TPM:1.66
1390 A_BomoMG_comp16941_c0_seq1
222bp
FPKM:4.95 TPM:3.91
1391 A_BomoMG_comp16942_c0_seq1
258bp
 hypothetical_protein_M422DRAFT_37749,_partial_[Sphaerobolus_stellatus_SS14]
FPKM:1.34 TPM:1.06
1392 A_BomoMG_comp16943_c0_seq1
554bp
FPKM:1.83 TPM:1.44
1393 A_BomoMG_comp16946_c0_seq1
217bp
FPKM:3.70 TPM:2.93
1394 A_BomoMG_comp169479_c0_seq1
366bp
 PREDICTED:_structural_maintenance_of_chromosomes_protein_6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000722 P telomere maintenance via recombination
GO:0000724 P double-strand break repair via homologous recombination
GO:0000781 C chromosome, telomeric region
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0016605 C PML body
GO:0030915 C Smc5-Smc6 complex
GO:0051276 P chromosome organization
GO:0090398 P cellular senescence
FPKM:6.46 TPM:5.10
1395 A_BomoMG_comp169507_c0_seq1
870bp
 5-oxoprolinase_[Papilio_machaon]
FPKM:3.49 TPM:2.76
1396 A_BomoMG_comp16950_c0_seq1
282bp
FPKM:3.59 TPM:2.84
1397 A_BomoMG_comp16950_c1_seq1
476bp
FPKM:1.92 TPM:1.52
1398 A_BomoMG_comp16952_c0_seq1
640bp
 PREDICTED:_mismatch_repair_endonuclease_PMS2_isoform_X2_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007126 P meiotic cell cycle
GO:0015630 C microtubule cytoskeleton
GO:0016446 P somatic hypermutation of immunoglobulin genes
GO:0016447 P somatic recombination of immunoglobulin gene segments
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0030983 F mismatched DNA binding
GO:0032138 F single base insertion or deletion binding
GO:0032300 C mismatch repair complex
GO:0032389 C MutLalpha complex
GO:0032407 F MutSalpha complex binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.66 TPM:1.31
1399 A_BomoMG_comp169535_c0_seq1
741bp
FPKM:3.06 TPM:2.42
1400 A_BomoMG_comp16957_c0_seq1
231bp
FPKM:3.10 TPM:2.45
1401 A_BomoMG_comp16959_c0_seq1
415bp
FPKM:2.91 TPM:2.30
1402 A_BomoMG_comp16960_c0_seq1
423bp
 hypothetical_protein_RSOLAG1IB_03326_[Rhizoctonia_solani_AG-1_IB]
FPKM:1.75 TPM:1.38
1403 A_BomoMG_comp169622_c0_seq1
327bp
 Putative_oxidoreductase_GLYR1-like_[Papilio_xuthus]
GO:0004616 F phosphogluconate dehydrogenase (decarboxylating) activity
GO:0016491 F oxidoreductase activity
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:5.17 TPM:4.09
1404 A_BomoMG_comp169631_c0_seq1
1102bp
FPKM:3.34 TPM:2.64
1405 A_BomoMG_comp16963_c0_seq1
321bp
 Acyl-CoA_dehydrogenase_[Operophtera_brumata]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005777 C peroxisome
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0007584 P response to nutrient
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0009725 P response to hormone
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0016853 F isomerase activity
GO:0031966 C mitochondrial membrane
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0042493 P response to xenobiotic stimulus
GO:0042802 F identical protein binding
GO:0046688 P response to copper ion
GO:0050660 F flavin adenine dinucleotide binding
GO:0051289 P protein homotetramerization
GO:0051384 P response to glucocorticoid
GO:0051793 P medium-chain fatty acid catabolic process
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
GO:0070991 F medium-chain-acyl-CoA dehydrogenase activity
FPKM:3.00 TPM:2.37
1406 A_BomoMG_comp16964_c0_seq1
399bp
FPKM:2.07 TPM:1.63
1407 A_BomoMG_comp169671_c0_seq1
639bp
FPKM:4.00 TPM:3.16
1408 A_BomoMG_comp169675_c0_seq1
1507bp
 PREDICTED:_probable_RNA_polymerase_II_nuclear_localization_protein_SLC7A6OS_isoform_X2_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0015031 P protein transport
FPKM:3.14 TPM:2.48
1409 A_BomoMG_comp16967_c0_seq1
205bp
 glycosyl_transferase_[Pectobacterium_carotovorum]
FPKM:5.05 TPM:3.99
1410 A_BomoMG_comp16968_c0_seq1
672bp
 PREDICTED:_WD_repeat_and_FYVE_domain-containing_protein_3_[Bombyx_mori]
GO:0003831 F beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005543 F phospholipid binding
GO:0005545 F 1-phosphatidylinositol binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005737 C cytoplasm
GO:0005776 C autophagosome
GO:0006914 P autophagy
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0016234 C inclusion body
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019898 C extrinsic component of membrane
GO:0031965 C nuclear membrane
GO:0034274 C Atg12-Atg5-Atg16 complex
GO:0035973 P aggrephagy
GO:0046872 F metal ion binding
GO:0097635 C extrinsic component of autophagosome membrane
FPKM:2.26 TPM:1.79
previous next from show/43914

- SilkBase 1999-2023 -