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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1111 A_BomoMG_comp160421_c0_seq1
1411bp
 PREDICTED:_angio-associated_migratory_cell_protein_[Amyelois_transitella]
GO:0001525 P angiogenesis
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007275 P multicellular organism development
GO:0009986 C cell surface
GO:0010595 P positive regulation of endothelial cell migration
GO:0014909 P smooth muscle cell migration
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0030154 P cell differentiation
GO:0045171 C intercellular bridge
FPKM:3.84 TPM:3.04
1112 A_BomoMG_comp160470_c0_seq1
1437bp
 PREDICTED:_nuclear_receptor-binding_protein_homolog_[Bombyx_mori]
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005938 C cell cortex
GO:0006468 P protein phosphorylation
GO:0006888 P endoplasmic reticulum to Golgi vesicle-mediated transport
GO:0012505 C endomembrane system
GO:0016020 C membrane
GO:0030027 C lamellipodium
GO:0042995 C cell projection
GO:0048471 C perinuclear region of cytoplasm
FPKM:3.34 TPM:2.64
1113 A_BomoMG_comp160484_c0_seq1
760bp
 ecdysteroid-regulated_16_kDa_protein_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
FPKM:4.06 TPM:3.21
1114 A_BomoMG_comp160531_c0_seq1
473bp
 PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_13_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0004252 F serine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0006508 P proteolysis
GO:0007275 P multicellular organism development
GO:0007526 P larval somatic muscle development
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045165 P cell fate commitment
GO:0045498 P sex comb development
GO:0048190 P wing disc dorsal/ventral pattern formation
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
FPKM:5.36 TPM:4.23
1115 A_BomoMG_comp160538_c0_seq1
431bp
FPKM:5.11 TPM:4.03
1116 A_BomoMG_comp160546_c0_seq1
848bp
FPKM:3.81 TPM:3.01
1117 A_BomoMG_comp160554_c0_seq1
1488bp
FPKM:3.73 TPM:2.95
1118 A_BomoMG_comp160625_c0_seq1
1191bp
 putative_RNA_3'-terminal_phosphate_cyclase-like_protein_[Papilio_xuthus]
GO:0000480 P endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003963 F RNA-3'-phosphate cyclase activity
GO:0004521 F endoribonuclease activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0009267 P cellular response to starvation
GO:0042254 P ribosome biogenesis
FPKM:2.63 TPM:2.08
1119 A_BomoMG_comp160630_c0_seq1
645bp
FPKM:3.43 TPM:2.71
1120 A_BomoMG_comp160634_c0_seq1
238bp
FPKM:6.14 TPM:4.85
1121 A_BomoMG_comp160641_c0_seq1
693bp
FPKM:2.72 TPM:2.15
1122 A_BomoMG_comp160707_c0_seq1
870bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_remodeling_and_spacing_factor_1-like_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006334 P nucleosome assembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0016584 P nucleosome positioning
GO:0016887 F ATP hydrolysis activity
GO:0031213 C RSF complex
GO:0034080 P CENP-A containing chromatin assembly
GO:0042393 F histone binding
GO:0043392 P negative regulation of DNA binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0050434 P positive regulation of viral transcription
FPKM:2.87 TPM:2.27
1123 A_BomoMG_comp160726_c0_seq1
763bp
 PREDICTED:_uncharacterized_protein_LOC101743520_[Bombyx_mori]
FPKM:3.80 TPM:3.00
1124 A_BomoMG_comp160732_c0_seq1
296bp
FPKM:1.75 TPM:1.38
1125 A_BomoMG_comp160790_c0_seq1
570bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_DNA-directed_RNA_polymerase_III_subunit_RPC8_[Bombyx_mori]
GO:0001056 F RNA polymerase III activity
GO:0002376 P immune system process
GO:0003677 F DNA binding
GO:0003899 F DNA-directed 5'-3' RNA polymerase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005666 C RNA polymerase III complex
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006383 P transcription by RNA polymerase III
GO:0006384 P transcription initiation from RNA polymerase III promoter
GO:0032481 P positive regulation of type I interferon production
GO:0043231 C intracellular membrane-bounded organelle
GO:0045087 P innate immune response
GO:0051607 P defense response to virus
FPKM:4.39 TPM:3.47
1126 A_BomoMG_comp160847_c0_seq1
400bp
 PREDICTED:_HMG_box-containing_protein_4_[Papilio_polytes]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0008333 P endosome to lysosome transport
GO:0016055 P Wnt signaling pathway
GO:0016589 C NURF complex
GO:0030178 P negative regulation of Wnt signaling pathway
FPKM:4.26 TPM:3.37
1127 A_BomoMG_comp160863_c0_seq1
1257bp
FPKM:3.34 TPM:2.64
1128 A_BomoMG_comp160868_c0_seq1
1029bp
FPKM:3.58 TPM:2.83
1129 A_BomoMG_comp160937_c0_seq1
1334bp
 cryptochrome_1_[Bombyx_mori]
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0000166 F nucleotide binding
GO:0005634 C nucleus
GO:0005641 C nuclear envelope lumen
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007165 P signal transduction
GO:0009785 P blue light signaling pathway
GO:0009881 F photoreceptor activity
GO:0009882 F blue light photoreceptor activity
GO:0018298 P protein-chromophore linkage
GO:0042752 P regulation of circadian rhythm
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0048471 C perinuclear region of cytoplasm
GO:0048511 P rhythmic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0050896 P response to stimulus
FPKM:2.13 TPM:1.68
1130 A_BomoMG_comp160945_c0_seq1
768bp
 allatotropin_[Manduca_sexta]
GO:0005576 C extracellular region
GO:0007218 P neuropeptide signaling pathway
FPKM:3.46 TPM:2.73
1131 A_BomoMG_comp161000_c0_seq1
215bp
FPKM:8.16 TPM:6.45
1132 A_BomoMG_comp161001_c0_seq1
222bp
 PREDICTED:_GPI_transamidase_component_PIG-S_isoform_X2_[Bombyx_mori]
GO:0003923 F GPI-anchor transamidase activity
GO:0005515 F protein binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006506 P GPI anchor biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016255 P attachment of GPI anchor to protein
GO:0042765 C GPI-anchor transamidase complex
FPKM:8.41 TPM:6.65
1133 A_BomoMG_comp161009_c0_seq1
862bp
 PREDICTED:_uncharacterized_protein_LOC101735441_[Bombyx_mori]
FPKM:3.69 TPM:2.91
1134 A_BomoMG_comp161019_c0_seq1
1888bp
 PREDICTED:_serine/arginine-rich_splicing_factor_4_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0001104 F transcription coregulator activity
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008134 F transcription factor binding
GO:0030374 F nuclear receptor coactivator activity
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051091 P positive regulation of DNA-binding transcription factor activity
FPKM:2.64 TPM:2.09
1135 A_BomoMG_comp161044_c0_seq1
307bp
FPKM:4.19 TPM:3.31
1136 A_BomoMG_comp161057_c0_seq1
1285bp
 PREDICTED:_proline-rich_protein_PRCC-like_[Plutella_xylostella]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0007049 P cell cycle
GO:0007093 P mitotic cell cycle checkpoint signaling
FPKM:3.00 TPM:2.37
1137 A_BomoMG_comp161063_c0_seq1
440bp
 PREDICTED:_pseudouridylate_synthase_7_homolog_[Amyelois_transitella]
GO:0000455 P enzyme-directed rRNA pseudouridine synthesis
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008380 P RNA splicing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
GO:0031119 P tRNA pseudouridine synthesis
GO:0031120 P snRNA pseudouridine synthesis
GO:0042254 P ribosome biogenesis
GO:1990481 P mRNA pseudouridine synthesis
FPKM:4.70 TPM:3.71
1138 A_BomoMG_comp161082_c0_seq1
371bp
 PREDICTED:_integrator_complex_subunit_7_[Bombyx_mori]
FPKM:5.15 TPM:4.07
1139 A_BomoMG_comp161084_c0_seq1
1216bp
 PREDICTED:_atrial_natriuretic_peptide_receptor_2-like_isoform_X2_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0004016 F adenylate cyclase activity
GO:0004383 F guanylate cyclase activity
GO:0004672 F protein kinase activity
GO:0005524 F ATP binding
GO:0005525 F GTP binding
GO:0005886 C plasma membrane
GO:0006182 P cGMP biosynthetic process
GO:0006468 P protein phosphorylation
GO:0006935 P chemotaxis
GO:0007165 P signal transduction
GO:0007606 P sensory perception of chemical stimulus
GO:0008074 C guanylate cyclase complex, soluble
GO:0009190 P cyclic nucleotide biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016829 F lyase activity
GO:0016849 F phosphorus-oxygen lyase activity
GO:0030424 C axon
GO:0030425 C dendrite
GO:0035556 P intracellular signal transduction
GO:0042048 P olfactory behavior
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0043204 C perikaryon
GO:0044297 C cell body
GO:0046872 F metal ion binding
GO:0050893 P sensory processing
FPKM:3.33 TPM:2.63
1140 A_BomoMG_comp161104_c0_seq1
942bp
 Ribosome-recycling_factor,_mitochondrial_[Papilio_xuthus]
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0032790 P ribosome disassembly
GO:0043023 F ribosomal large subunit binding
GO:0070126 P mitochondrial translational termination
FPKM:3.83 TPM:3.02
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