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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4561 A_BomoFB_comp10563_c1_seq42
500bp
 PREDICTED:_uncharacterized_protein_LOC101735359_isoform_X3_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4562 A_BomoFB_comp10563_c1_seq43
1100bp
 Mariner_Mos1_transposase_[Acromyrmex_echinatior]
FPKM:0.00 TPM:0.00
4563 A_BomoFB_comp10563_c1_seq44
631bp
 PREDICTED:_uncharacterized_protein_LOC101735359_isoform_X3_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4564 A_BomoFB_comp10563_c1_seq45
1588bp
 PREDICTED:_maspardin-like_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0030140 C trans-Golgi network transport vesicle
GO:0042609 F CD4 receptor binding
FPKM:0.25 TPM:0.28
4565 A_BomoFB_comp10563_c1_seq46
2020bp
 PREDICTED:_maspardin-like_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0030140 C trans-Golgi network transport vesicle
GO:0042609 F CD4 receptor binding
FPKM:0.00 TPM:0.00
4566 A_BomoFB_comp10563_c1_seq47
477bp
FPKM:0.00 TPM:0.00
4567 A_BomoFB_comp10563_c1_seq48
1469bp
 PREDICTED:_uncharacterized_protein_LOC106141992,_partial_[Amyelois_transitella]
FPKM:0.71 TPM:0.77
4568 A_BomoFB_comp10563_c1_seq49
846bp
 PREDICTED:_uncharacterized_protein_LOC106141992,_partial_[Amyelois_transitella]
FPKM:4.88 TPM:5.34
4569 A_BomoFB_comp10563_c1_seq5
990bp
 PREDICTED:_uncharacterized_protein_LOC106141992,_partial_[Amyelois_transitella]
FPKM:0.04 TPM:0.04
4570 A_BomoFB_comp10563_c1_seq6
1970bp
 PREDICTED:_maspardin-like_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0030140 C trans-Golgi network transport vesicle
GO:0042609 F CD4 receptor binding
FPKM:1.68 TPM:1.84
4571 A_BomoFB_comp10563_c1_seq7
379bp
 PREDICTED:_butyrophilin_subfamily_3_member_A2-like_[Haliaeetus_albicilla]
FPKM:1.33 TPM:1.46
4572 A_BomoFB_comp10563_c1_seq8
573bp
FPKM:0.90 TPM:0.99
4573 A_BomoFB_comp10563_c1_seq9
2537bp
 PREDICTED:_maspardin-like_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0030140 C trans-Golgi network transport vesicle
GO:0042609 F CD4 receptor binding
FPKM:0.00 TPM:0.00
4574 A_BomoFB_comp105648_c0_seq1
2097bp
 PREDICTED:_oocyte_zinc_finger_protein_XlCOF6-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.50 TPM:2.74
4575 A_BomoFB_comp10564_c0_seq1
1204bp
 tropomyosin-1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:1009.16 TPM:1105.75
4576 A_BomoFB_comp10564_c0_seq2
1413bp
 tropomyosin-2_isoform_1_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:647.47 TPM:709.44
4577 A_BomoFB_comp10564_c1_seq1
249bp
 hypothetical_protein_[Citrobacter_sp._FDAARGOS_156]
FPKM:2.32 TPM:2.54
4578 A_BomoFB_comp10564_c2_seq1
214bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:2.69 TPM:2.95
4579 A_BomoFB_comp10564_c3_seq1
2961bp
 PREDICTED:_uncharacterized_protein_LOC101737183_[Bombyx_mori]
FPKM:0.30 TPM:0.33
4580 A_BomoFB_comp10564_c3_seq10
333bp
FPKM:1.98 TPM:2.17
4581 A_BomoFB_comp10564_c3_seq11
1723bp
 PREDICTED:_methylenetetrahydrofolate_reductase_[Amyelois_transitella]
GO:0001666 P response to hypoxia
GO:0003824 F catalytic activity
GO:0004489 F methylenetetrahydrofolate reductase (NAD(P)H) activity
GO:0005829 C cytosol
GO:0006520 P cellular amino acid metabolic process
GO:0006555 P methionine metabolic process
GO:0008015 P blood circulation
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0031060 P regulation of histone methylation
GO:0032403 F protein-containing complex binding
GO:0033274 P response to vitamin B2
GO:0035999 P tetrahydrofolate interconversion
GO:0042493 P response to xenobiotic stimulus
GO:0043005 C neuron projection
GO:0043200 P response to amino acid
GO:0046500 P S-adenosylmethionine metabolic process
GO:0046653 P tetrahydrofolate metabolic process
GO:0046655 P folic acid metabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0050667 P homocysteine metabolic process
GO:0051593 P response to folic acid
GO:0055114 P obsolete oxidation-reduction process
GO:0070555 P response to interleukin-1
GO:0070829 P obsolete heterochromatin maintenance
GO:0072341 F modified amino acid binding
FPKM:0.32 TPM:0.35
4582 A_BomoFB_comp10564_c3_seq12
1972bp
 PREDICTED:_uncharacterized_protein_LOC101737183_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4583 A_BomoFB_comp10564_c3_seq13
1493bp
 PREDICTED:_methylenetetrahydrofolate_reductase_[Amyelois_transitella]
GO:0001666 P response to hypoxia
GO:0003824 F catalytic activity
GO:0004489 F methylenetetrahydrofolate reductase (NAD(P)H) activity
GO:0005829 C cytosol
GO:0006520 P cellular amino acid metabolic process
GO:0006555 P methionine metabolic process
GO:0008015 P blood circulation
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0031060 P regulation of histone methylation
GO:0032403 F protein-containing complex binding
GO:0033274 P response to vitamin B2
GO:0035999 P tetrahydrofolate interconversion
GO:0042493 P response to xenobiotic stimulus
GO:0043005 C neuron projection
GO:0043200 P response to amino acid
GO:0046500 P S-adenosylmethionine metabolic process
GO:0046653 P tetrahydrofolate metabolic process
GO:0046655 P folic acid metabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0050667 P homocysteine metabolic process
GO:0051593 P response to folic acid
GO:0055114 P obsolete oxidation-reduction process
GO:0070555 P response to interleukin-1
GO:0070829 P obsolete heterochromatin maintenance
GO:0072341 F modified amino acid binding
FPKM:1.09 TPM:1.19
4584 A_BomoFB_comp10564_c3_seq14
553bp
FPKM:12.43 TPM:13.62
4585 A_BomoFB_comp10564_c3_seq15
1228bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.24 TPM:0.26
4586 A_BomoFB_comp10564_c3_seq16
2423bp
 PREDICTED:_uncharacterized_protein_LOC101737183_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4587 A_BomoFB_comp10564_c3_seq17
1357bp
 PREDICTED:_methylenetetrahydrofolate_reductase_[Amyelois_transitella]
GO:0001666 P response to hypoxia
GO:0003824 F catalytic activity
GO:0004489 F methylenetetrahydrofolate reductase (NAD(P)H) activity
GO:0005829 C cytosol
GO:0006520 P cellular amino acid metabolic process
GO:0006555 P methionine metabolic process
GO:0008015 P blood circulation
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0031060 P regulation of histone methylation
GO:0032403 F protein-containing complex binding
GO:0033274 P response to vitamin B2
GO:0035999 P tetrahydrofolate interconversion
GO:0042493 P response to xenobiotic stimulus
GO:0043005 C neuron projection
GO:0043200 P response to amino acid
GO:0046500 P S-adenosylmethionine metabolic process
GO:0046653 P tetrahydrofolate metabolic process
GO:0046655 P folic acid metabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0050667 P homocysteine metabolic process
GO:0051593 P response to folic acid
GO:0055114 P obsolete oxidation-reduction process
GO:0070555 P response to interleukin-1
GO:0070829 P obsolete heterochromatin maintenance
GO:0072341 F modified amino acid binding
FPKM:0.27 TPM:0.30
4588 A_BomoFB_comp10564_c3_seq18
786bp
 reverse_transcriptase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4589 A_BomoFB_comp10564_c3_seq19
758bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.00 TPM:0.00
4590 A_BomoFB_comp10564_c3_seq2
736bp
 glutamate--cysteine_ligase_[Streptomyces_toyocaensis]
FPKM:0.38 TPM:0.42
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