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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4501 A_BomoFB_comp10562_c1_seq33
2783bp
 PREDICTED:_transcription_factor_CP2-like_protein_1_isoform_X2_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0043565 F sequence-specific DNA binding
FPKM:8.97 TPM:9.82
4502 A_BomoFB_comp10562_c1_seq34
2588bp
 PREDICTED:_threonine--tRNA_ligase,_cytoplasmic_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004829 F threonine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006435 P threonyl-tRNA aminoacylation
GO:0015629 C actin cytoskeleton
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070062 C extracellular exosome
FPKM:0.00 TPM:0.00
4503 A_BomoFB_comp10562_c1_seq35
3184bp
 PREDICTED:_uncharacterized_protein_LOC101747033_[Bombyx_mori]
FPKM:0.53 TPM:0.58
4504 A_BomoFB_comp10562_c1_seq36
644bp
 PREDICTED:_ecto-nucleotidase_isoform_X1_[Bombyx_mori]
FPKM:0.39 TPM:0.43
4505 A_BomoFB_comp10562_c1_seq37
519bp
FPKM:0.00 TPM:0.00
4506 A_BomoFB_comp10562_c1_seq38
1037bp
 PREDICTED:_uncharacterized_protein_LOC101747033_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4507 A_BomoFB_comp10562_c1_seq39
3204bp
 PREDICTED:_transcription_factor_CP2-like_protein_1_isoform_X1_[Bombyx_mori]
GO:0001525 P angiogenesis
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0043565 F sequence-specific DNA binding
FPKM:6.93 TPM:7.60
4508 A_BomoFB_comp10562_c1_seq4
875bp
FPKM:0.00 TPM:0.00
4509 A_BomoFB_comp10562_c1_seq40
984bp
 PREDICTED:_ecto-nucleotidase_isoform_X1_[Bombyx_mori]
FPKM:0.35 TPM:0.38
4510 A_BomoFB_comp10562_c1_seq41
1442bp
 PREDICTED:_uncharacterized_protein_LOC101747033_[Bombyx_mori]
FPKM:1.91 TPM:2.10
4511 A_BomoFB_comp10562_c1_seq42
961bp
FPKM:3.94 TPM:4.32
4512 A_BomoFB_comp10562_c1_seq43
2649bp
 PREDICTED:_threonine--tRNA_ligase,_cytoplasmic_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004829 F threonine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006435 P threonyl-tRNA aminoacylation
GO:0015629 C actin cytoskeleton
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070062 C extracellular exosome
FPKM:0.00 TPM:0.00
4513 A_BomoFB_comp10562_c1_seq44
3221bp
 PREDICTED:_uncharacterized_protein_LOC101747033_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4514 A_BomoFB_comp10562_c1_seq5
964bp
 PREDICTED:_ecto-nucleotidase_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4515 A_BomoFB_comp10562_c1_seq6
3035bp
 PREDICTED:_threonine--tRNA_ligase,_cytoplasmic_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004829 F threonine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006435 P threonyl-tRNA aminoacylation
GO:0015629 C actin cytoskeleton
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070062 C extracellular exosome
FPKM:6.12 TPM:6.71
4516 A_BomoFB_comp10562_c1_seq7
363bp
FPKM:0.00 TPM:0.00
4517 A_BomoFB_comp10562_c1_seq8
685bp
 PREDICTED:_ecto-nucleotidase_isoform_X1_[Bombyx_mori]
FPKM:0.00 TPM:0.00
4518 A_BomoFB_comp10562_c1_seq9
2608bp
 PREDICTED:_threonine--tRNA_ligase,_cytoplasmic_isoform_X2_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003723 F RNA binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004829 F threonine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006435 P threonyl-tRNA aminoacylation
GO:0015629 C actin cytoskeleton
GO:0016874 F ligase activity
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0070062 C extracellular exosome
FPKM:0.00 TPM:0.00
4519 A_BomoFB_comp10562_c2_seq1
657bp
FPKM:3.06 TPM:3.35
4520 A_BomoFB_comp10562_c2_seq2
1255bp
 PREDICTED:_smad_nuclear-interacting_protein_1_isoform_X3_[Bombyx_mori]
GO:0001501 P skeletal system development
GO:0005201 F extracellular matrix structural constituent
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005540 F hyaluronic acid binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0007155 P cell adhesion
GO:0007417 P central nervous system development
GO:0030246 F carbohydrate binding
GO:0046872 F metal ion binding
FPKM:1.28 TPM:1.40
4521 A_BomoFB_comp10562_c2_seq3
2303bp
 PREDICTED:_smad_nuclear-interacting_protein_1_isoform_X3_[Bombyx_mori]
GO:0005634 C nucleus
GO:0031047 P gene silencing by RNA
GO:0035196 P production of miRNAs involved in gene silencing by miRNA
FPKM:7.01 TPM:7.68
4522 A_BomoFB_comp1056380_c0_seq1
237bp
FPKM:1.83 TPM:2.00
4523 A_BomoFB_comp105639_c0_seq1
449bp
FPKM:4.08 TPM:4.47
4524 A_BomoFB_comp10563_c0_seq1
1139bp
 mariner_transposase_C9_mutant_[Mutagenesis_vector_pCAM45]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:6.47 TPM:7.09
4525 A_BomoFB_comp10563_c1_seq1
1326bp
FPKM:0.00 TPM:0.00
4526 A_BomoFB_comp10563_c1_seq10
922bp
 putative_dde_superfamily_endonuclease_[Operophtera_brumata]
FPKM:1.52 TPM:1.67
4527 A_BomoFB_comp10563_c1_seq11
1537bp
 PREDICTED:_uncharacterized_protein_LOC106141992,_partial_[Amyelois_transitella]
FPKM:0.42 TPM:0.46
4528 A_BomoFB_comp10563_c1_seq12
2006bp
 PREDICTED:_maspardin-like_[Amyelois_transitella]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008150 P biological_process
GO:0030140 C trans-Golgi network transport vesicle
GO:0042609 F CD4 receptor binding
FPKM:0.02 TPM:0.02
4529 A_BomoFB_comp10563_c1_seq13
1957bp
 PREDICTED:_uncharacterized_protein_LOC106141992,_partial_[Amyelois_transitella]
FPKM:3.43 TPM:3.76
4530 A_BomoFB_comp10563_c1_seq14
914bp
 PREDICTED:_uncharacterized_protein_LOC106141992,_partial_[Amyelois_transitella]
FPKM:0.00 TPM:0.00
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