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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3541 A_BomoFB_comp10526_c0_seq1
4150bp
 Gag-Pol_polyprotein_[Medicago_truncatula]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.99 TPM:4.37
3542 A_BomoFB_comp10526_c0_seq2
4116bp
 Gag-Pol_polyprotein_[Medicago_truncatula]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.77 TPM:1.93
3543 A_BomoFB_comp10526_c0_seq3
308bp
 hypothetical_protein_KFL_000420010_[Klebsormidium_flaccidum]
FPKM:0.00 TPM:0.00
3544 A_BomoFB_comp10526_c0_seq4
3713bp
 gag-pol_polyprotein,_partial_[Lasius_niger]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:0.84 TPM:0.92
3545 A_BomoFB_comp1052729_c0_seq1
277bp
FPKM:1.13 TPM:1.24
3546 A_BomoFB_comp1052773_c0_seq1
206bp
FPKM:1.59 TPM:1.74
3547 A_BomoFB_comp10527_c0_seq1
869bp
FPKM:3.40 TPM:3.73
3548 A_BomoFB_comp10527_c1_seq1
339bp
FPKM:1.39 TPM:1.52
3549 A_BomoFB_comp10527_c2_seq1
1457bp
 olfactory_receptor_[Bombyx_mori]
FPKM:3.11 TPM:3.41
3550 A_BomoFB_comp10527_c3_seq1
270bp
 serine_protease_inhibitor_33_precursor_[Bombyx_mori]
FPKM:39.99 TPM:43.82
3551 A_BomoFB_comp10527_c4_seq1
749bp
 hypothetical_protein_CONCODRAFT_1959_[Conidiobolus_coronatus_NRRL_28638]
FPKM:10.55 TPM:11.56
3552 A_BomoFB_comp10527_c4_seq2
484bp
FPKM:7.39 TPM:8.10
3553 A_BomoFB_comp10527_c4_seq3
320bp
FPKM:0.79 TPM:0.86
3554 A_BomoFB_comp10527_c6_seq1
2477bp
 serpin-24_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3555 A_BomoFB_comp10527_c6_seq10
441bp
 PREDICTED:_uncharacterized_protein_LOC105841570_[Bombyx_mori]
FPKM:0.89 TPM:0.97
3556 A_BomoFB_comp10527_c6_seq11
732bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:129.16 TPM:141.52
3557 A_BomoFB_comp10527_c6_seq12
945bp
 PREDICTED:_uncharacterized_protein_LOC105841570_[Bombyx_mori]
FPKM:21.60 TPM:23.67
3558 A_BomoFB_comp10527_c6_seq13
1866bp
 ubiquitin_and_ribosomal_protein_S27a_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:8.54 TPM:9.36
3559 A_BomoFB_comp10527_c6_seq14
1440bp
FPKM:0.53 TPM:0.58
3560 A_BomoFB_comp10527_c6_seq15
2264bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:13.80 TPM:15.12
3561 A_BomoFB_comp10527_c6_seq16
2475bp
 ubiquitin_and_ribosomal_protein_S27a_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:69.15 TPM:75.77
3562 A_BomoFB_comp10527_c6_seq17
441bp
 PREDICTED:_uncharacterized_protein_LOC105841570_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3563 A_BomoFB_comp10527_c6_seq18
2391bp
 ecdysteroid-regulated_16_kDa_protein_precursor_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005840 C ribosome
GO:0006412 P translation
GO:0030529 C ribonucleoprotein complex
GO:0046872 F metal ion binding
FPKM:0.00 TPM:0.00
3564 A_BomoFB_comp10527_c6_seq19
1627bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:28.41 TPM:31.13
3565 A_BomoFB_comp10527_c6_seq2
1185bp
 ecdysteroid-regulated_16_kDa_protein_precursor_[Bombyx_mori]
GO:0005576 C extracellular region
FPKM:112.27 TPM:123.01
3566 A_BomoFB_comp10527_c6_seq20
2938bp
 PREDICTED:_ester_hydrolase_C11orf54_homolog_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:2.11 TPM:2.32
3567 A_BomoFB_comp10527_c6_seq21
1984bp
 PREDICTED:_ester_hydrolase_C11orf54_homolog_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:42.82 TPM:46.92
3568 A_BomoFB_comp10527_c6_seq22
1344bp
FPKM:8.36 TPM:9.16
3569 A_BomoFB_comp10527_c6_seq3
1840bp
 serpin-24_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3570 A_BomoFB_comp10527_c6_seq4
3575bp
 PREDICTED:_ester_hydrolase_C11orf54_homolog_isoform_X1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0008152 P metabolic process
GO:0008270 F zinc ion binding
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
FPKM:21.38 TPM:23.42
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