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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3361 A_BomoFB_comp10515_c0_seq12
2954bp
 ubiquitin-conjugating_enzyme_rad6_[Culex_quinquefasciatus]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0000422 P autophagy of mitochondrion
GO:0000790 C chromatin
GO:0002039 F p53 binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007052 P mitotic spindle organization
GO:0016567 P protein ubiquitination
GO:0016574 P histone ubiquitination
GO:0016740 F transferase activity
GO:0019904 F protein domain specific binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032456 P endocytic recycling
GO:0033503 C HULC complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0051297 P centrosome cycle
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
FPKM:4.61 TPM:5.05
3362 A_BomoFB_comp10515_c0_seq2
795bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
FPKM:0.84 TPM:0.93
3363 A_BomoFB_comp10515_c0_seq3
1489bp
 ubiquitin-conjugating_enzyme_E2-17_kDa_[Papilio_polytes]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0000422 P autophagy of mitochondrion
GO:0000790 C chromatin
GO:0002039 F p53 binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007052 P mitotic spindle organization
GO:0016567 P protein ubiquitination
GO:0016574 P histone ubiquitination
GO:0016740 F transferase activity
GO:0019904 F protein domain specific binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032456 P endocytic recycling
GO:0033503 C HULC complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0051297 P centrosome cycle
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
FPKM:10.89 TPM:11.93
3364 A_BomoFB_comp10515_c0_seq4
1055bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
FPKM:1.05 TPM:1.15
3365 A_BomoFB_comp10515_c0_seq5
276bp
 PREDICTED:_uncharacterized_protein_LOC107048362_[Diachasma_alloeum]
FPKM:2.85 TPM:3.12
3366 A_BomoFB_comp10515_c0_seq6
1643bp
 ubiquitin-conjugating_enzyme_rad6_[Culex_quinquefasciatus]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0000422 P autophagy of mitochondrion
GO:0000790 C chromatin
GO:0002039 F p53 binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007052 P mitotic spindle organization
GO:0016567 P protein ubiquitination
GO:0016574 P histone ubiquitination
GO:0016740 F transferase activity
GO:0019904 F protein domain specific binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032456 P endocytic recycling
GO:0033503 C HULC complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0051297 P centrosome cycle
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
FPKM:0.38 TPM:0.42
3367 A_BomoFB_comp10515_c0_seq7
3400bp
 ubiquitin-conjugating_enzyme_rad6_[Culex_quinquefasciatus]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0000422 P autophagy of mitochondrion
GO:0000790 C chromatin
GO:0002039 F p53 binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007052 P mitotic spindle organization
GO:0016567 P protein ubiquitination
GO:0016574 P histone ubiquitination
GO:0016740 F transferase activity
GO:0019904 F protein domain specific binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032456 P endocytic recycling
GO:0033503 C HULC complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0051297 P centrosome cycle
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
FPKM:0.33 TPM:0.36
3368 A_BomoFB_comp10515_c0_seq8
3725bp
 RNA-directed_DNA_polymerase_from_mobile_element_jockey_[Papilio_machaon]
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0000422 P autophagy of mitochondrion
GO:0000790 C chromatin
GO:0002039 F p53 binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007052 P mitotic spindle organization
GO:0016567 P protein ubiquitination
GO:0016574 P histone ubiquitination
GO:0016740 F transferase activity
GO:0019904 F protein domain specific binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032456 P endocytic recycling
GO:0033503 C HULC complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0051297 P centrosome cycle
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
FPKM:2.18 TPM:2.39
3369 A_BomoFB_comp10515_c0_seq9
920bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
FPKM:9.19 TPM:10.07
3370 A_BomoFB_comp105160_c0_seq1
1533bp
 PREDICTED:_uncharacterized_protein_LOC106139004_[Amyelois_transitella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000077 P DNA damage checkpoint signaling
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0016787 F hydrolase activity
GO:0051301 P cell division
GO:0051321 P meiotic cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:2.53 TPM:2.78
3371 A_BomoFB_comp10516_c0_seq1
3593bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X1_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:5.43 TPM:5.94
3372 A_BomoFB_comp10516_c0_seq2
272bp
FPKM:2.37 TPM:2.60
3373 A_BomoFB_comp10516_c0_seq3
3606bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X2_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:7.80 TPM:8.55
3374 A_BomoFB_comp10516_c0_seq4
1570bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X4_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:0.00 TPM:0.00
3375 A_BomoFB_comp10516_c0_seq5
1619bp
 PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_isoform_X4_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0008152 P metabolic process
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:0.95 TPM:1.04
3376 A_BomoFB_comp10516_c0_seq6
321bp
 glutamate_synthase,_putative_[Perkinsus_marinus_ATCC_50983]
FPKM:2.48 TPM:2.72
3377 A_BomoFB_comp105172_c0_seq1
611bp
 putative_histone-fold_protein_CHRAC_subunit_[Danaus_plexippus]
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006338 P chromatin remodeling
GO:0008152 P metabolic process
GO:0008622 C epsilon DNA polymerase complex
GO:0008623 C CHRAC
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046982 F protein heterodimerization activity
GO:0071897 P DNA biosynthetic process
FPKM:4.06 TPM:4.45
3378 A_BomoFB_comp10517_c0_seq1
2638bp
 enoyl-CoA_hydratase_domain-containing_protein_3_[Agrotis_segetum]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0003956 F NAD(P)+-protein-arginine ADP-ribosyltransferase activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006471 P protein ADP-ribosylation
GO:0006810 P transport
GO:0007264 P small GTPase mediated signal transduction
GO:0007269 P neurotransmitter secretion
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016197 P endosomal transport
GO:0048488 P synaptic vesicle endocytosis
GO:0048749 P compound eye development
GO:0098793 C presynapse
FPKM:13.01 TPM:14.26
3379 A_BomoFB_comp10517_c0_seq2
2705bp
 PREDICTED:_enoyl-CoA_hydratase_domain-containing_protein_3,_mitochondrial_isoform_X1_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0003956 F NAD(P)+-protein-arginine ADP-ribosyltransferase activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0006471 P protein ADP-ribosylation
GO:0006810 P transport
GO:0007264 P small GTPase mediated signal transduction
GO:0007269 P neurotransmitter secretion
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016197 P endosomal transport
GO:0048488 P synaptic vesicle endocytosis
GO:0048749 P compound eye development
GO:0098793 C presynapse
FPKM:1.86 TPM:2.04
3380 A_BomoFB_comp10517_c1_seq1
623bp
FPKM:5.76 TPM:6.31
3381 A_BomoFB_comp10517_c2_seq1
4182bp
 PREDICTED:_serine/threonine-protein_phosphatase_2A_catalytic_subunit_beta_isoform_isoform_X1_[Papilio_polytes]
GO:0000775 C chromosome, centromeric region
GO:0000922 C spindle pole
GO:0004721 F phosphoprotein phosphatase activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006470 P protein dephosphorylation
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0046982 F protein heterodimerization activity
GO:0051321 P meiotic cell cycle
FPKM:17.35 TPM:19.01
3382 A_BomoFB_comp1051885_c0_seq1
271bp
FPKM:1.20 TPM:1.31
3383 A_BomoFB_comp1051886_c0_seq1
218bp
FPKM:2.50 TPM:2.74
3384 A_BomoFB_comp105188_c0_seq1
222bp
FPKM:1.16 TPM:1.27
3385 A_BomoFB_comp1051891_c0_seq1
264bp
 bloated_tubules_[Danaus_plexippus]
GO:0005328 F neurotransmitter:sodium symporter activity
GO:0005329 F dopamine:sodium symporter activity
GO:0005330 F dopamine:sodium symporter activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006836 P neurotransmitter transport
GO:0015293 F symporter activity
GO:0015872 P dopamine transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0043005 C neuron projection
GO:0046872 F metal ion binding
GO:0051583 P dopamine uptake involved in synaptic transmission
GO:0055085 P transmembrane transport
GO:0072488 P ammonium transmembrane transport
GO:0098793 C presynapse
FPKM:1.29 TPM:1.42
3386 A_BomoFB_comp10518_c0_seq1
254bp
 glutamate_transporter_[Bombyx_mori]
FPKM:3.58 TPM:3.92
3387 A_BomoFB_comp10518_c0_seq10
301bp
 reverse_transcriptase_[Bombyx_mori]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:3.46 TPM:3.79
3388 A_BomoFB_comp10518_c0_seq11
454bp
 PREDICTED:_dystonin-like_[Bombyx_mori]
FPKM:0.00 TPM:0.00
3389 A_BomoFB_comp10518_c0_seq12
4211bp
 Dystonin_[Papilio_xuthus]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005874 C microtubule
GO:0005886 C plasma membrane
GO:0007050 P regulation of cell cycle
GO:0008017 F microtubule binding
GO:0008152 P metabolic process
GO:0010632 P regulation of epithelial cell migration
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016887 F ATP hydrolysis activity
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0032587 C ruffle membrane
GO:0032886 P regulation of microtubule-based process
GO:0042060 P wound healing
GO:0042995 C cell projection
GO:0043001 P Golgi to plasma membrane protein transport
GO:0044822 F RNA binding
GO:0045773 P positive regulation of axon extension
GO:0046872 F metal ion binding
GO:0051015 F actin filament binding
GO:0051893 P regulation of focal adhesion assembly
FPKM:3.16 TPM:3.46
3390 A_BomoFB_comp10518_c0_seq13
844bp
 glutamate_transporter_[Bombyx_mori]
FPKM:2.96 TPM:3.24
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