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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomoFB_comp10515_c0_seq8
Scaffold_idBomo_Scaf010
NCBI non-redundant
(nr)		RNA-directed_DNA_polymerase_from_mobile_element_jockey_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0000209 P protein polyubiquitination
GO:0000422 P autophagy of mitochondrion
GO:0000790 C chromatin
GO:0002039 F p53 binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007052 P mitotic spindle organization
GO:0016567 P protein ubiquitination
GO:0016574 P histone ubiquitination
GO:0016740 F transferase activity
GO:0019904 F protein domain specific binding
GO:0031625 F ubiquitin protein ligase binding
GO:0032436 P positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0032456 P endocytic recycling
GO:0033503 C HULC complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043518 P negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0051297 P centrosome cycle
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0061631 F ubiquitin conjugating enzyme activity
GO:1902166 P negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
Transcript
Level		FPKM:2.18 TPM:2.39
ORF EntryO_BomoFB14723_complete:A_BomoFB_comp10515_c0_seq8
Sequence
(Nucleotide)
GAATCCGTGGTAATAACATTTGATGGACAGGTTTTACCTAAAAGAGTATATATGTGTTTT
ACATCATTACCAGTTGATTTATACATTTATCCTACAGTTCAATGTTTTAATTGCTGTAGA
TTCGGTCATGTTAGAGCTCAGTGTAGATCGAAACCGCGTTGTTTTAAATGTGGTCAAGAT
CATACAGGAGATTCTTGTAATGTAGAGGAGGAACATGTTTCCTGTTGTCTTTGTAAAGGC
TTACACTTTGCTATAAATAAGAAATGTCCAGAATTTGAAAGACAAAGGGCCATAAAGCAG
ACAATGGCGAACAGTTGTGTGTCATACTTGGAAGCATGTAAACTTCATCCTCCAGTGTAT
AAATCGTATGCTGATGTTCTTTCTTCAATTCCATCGGATCGTAAGAATCATTCAACGTTT
CATGAATCTATTGCCCCCAGCCCAGTAATTGCCAGTAAAAGTCCATCGTCATATAAAAAA
ACAGTTTTTATGAAACCTCGATCTCCCTTTAAAGGTGATAAAGGTTTTGATCAAAGGGCC
CATAGAAATCTTACAAGAGATTACGATGCTCCATCTCCTTCTAATGGCTGTGCTTTAAAA
TTTAATGAAAATCCCGAATCTCCTGTGGCATCAAACATGGGGAAGCTCAATATCTAACGA
ATTTGGAGATATAATTCTTGATTTTGTTAATGAACAGAATTTGTGTATTTTAAATTCCGG
AAGTCCAACTCGTAGAACTGGCCCTGATCAAATTGTTAGTGCTCCTGATATATCTATTTC
CTCCCCATCTCTGGTGCCGTCTTTGTCCTTATGATCTGGCTGACAAGTTTCTTGATAAAT
TAGCTCCCCCTTATGTTCCAGAAGAATGTTTAGTTCTTATCCCGTCTGTCCTTCCTTTCT
CATGTTCAGATCCAGTTTCAGATTTTGATTTACCTTTTTCATTTAATGAACTGAAGGGGG
TAATCTCGAATCTTAAGGACTCTGCTCCAGGTGATGATAAGATTCCTTATTCTTTCTTTG
TCCATTTGAGTGATTCTAGTCTCACATATTACCTCAACCTTATAAATTCTATGTTCATTA
CATGTGTTATCCCAGAGTCATGGAAAAAACAAATTATTTTACCCATTCTCAAACCGGGTA
AATCTTCATCAGATGTATTGTCATACAGACCCATAGCTCTCTCATCTGTAATGTTGAAAA
TTTTAGAACATTTAATTAAAATTAGATTAGAATGGTTTGTGGAAAGTAACAGTTTACTCA
GTGACAGTCAAAACGGATTTAGAAGGGGTAAAAGCACAATGGACAATCTTGCTACCTTTA
TAGTGGATATTTTGGTAGCTTTCTCACACACTGAATCTATTGTAGCTGGATTTCTGGATA
TTTCCGCTGCATATGATAATGTACATATTCCTACACTCCTTTACAAATTACAGAAAATAA
GGGTTCCTGTTAGACTAGCTAACTTGATTATTACTATAATGTCAAATCGAACTATCATTT
TAAACTCTACCTCCTCAGATTCACAACAATCTAGAACTTTATGGAGAGGTCTCCCTCAAG
GATCTGTGTTAAGTCCAATTTTATACAATATATACACTTGTGATTTGGAAGAGACCCTTG
GAAATCAAGTAAGAATTCTTCAATATGCTGATGACCTCCTTATGTACACTTGCAATAAAG
ACATACATAAGGCTTGCTTATCCCTTAGGAATTCATTTCTAACTCTTAAATCTTGGTTAG
ATAATAATGGACTTTCCCTTTCTGCCTCCAAAAGTTCTATTGTTGTATTCTCTAGAAAAC
GTTCTCTTCCTCCAATTAATATATTCTATGAGAATGAATTAATTTCTGTAAACAGTCATG
TTAAATTTTTAGGTTTAATTTTAGATTCAAAATTGAATGGAATTCAACATTGTAATTACA
TTACAAACAAGTGTTTGAGTAATATGAATATCTTGCGTTCTCTTGCCGGTGTATGGTGGG
GTGCCCACCCATTCAATTTAAAACTTTTATATAATGCCATAGTAAGATCAGTTTTAGATT
ATGGTACTTTTTTACTTCAACCAGGGGATGTGAATGCTTTCAAAAAACTAGACTCTATAC
AGTCTAAAGCACTCCGAATTATCACTGGAGCCATGAAATCTAGTCCTGTTACAGCATTAC
AGGTAGAATGTGTTGATCCTCCTCTTCATTTGAGACGTCAATATTTATCTGATAAATTCG
TTTTCAAATCCCGATTCAAAGAGTTCTTTACAGGCTCTTGCAAAATTTCCTTTTAAATCT
CAACCGATTTACCCTATTCTCTTAGACTGTAGAAACCATTCCTTCCAAACCATGGTTCTA
CAAATATAATTTTAAACGCCACGAGACTTCCAGTTTGATACGGATGAGATTAGGCCACAC
ATGTAGTCCGGCACATCTAGCGACGATCGGAGTGCTGGATAGCACTTACAAGAGGATCCA
CCTACAGGTGTGTCAGGAGCTCCAACTGATAACAATATTATGATCTGGAATGCTGTGATA
TTTGGCCCTCATGATACTCCATTTGAAGATGGAACATTCAAACTCACAATAGAATTTACA
GAAGAATATCCAAATAAACCCCCAACAGTACGATTTGTATCAAAAATGTTTCATCCAAAT
GTTTACGCCGATGGTGGAATCTGCCTAGATATCCTGCAAAACAGATGGAGTCCTACTTAT
GATGTTTCAGCTATACTTACTTCTATACAGTCATTATTAAGTGATCCCAACCCAAACTCT
CCAGCAAATTCGATGGCCGCACAGCTTTACAAGGAGAATCGACGAGAATACGAAAAGAGA
GTGAAAGCGTGTGTAGAACAATCATTTATTGATTAGCAGGGGACACTACTGACTTTATTT
GTCAGCGTCACATCAACAGTGTTGCCGAGGAAACCGGCGTATACATGCATTCATTGGAAT
GAGAGTGTAAATTGTAAATTTTATTACTTGCATACTTGTTTGGACATTTTCAGTCAAAAT
TTATAGCAAATAAATGTTTTCGTTTTGTTCATATTAAATTTATTAGTGAGAGTCAATGCA
ATTGGTGTAAATCCAAATTGGGTTTATAAACCAAATATTATCCAATGGCAATAACTTGAA
AACATTATTTAAAATATACCAAGTTATGTATTATAAATAAAAACTACAATAATATGTACA
ATGAATAAATCTTTCATTAAATCACATATTTTCACATTACAGGAAAACACTGTACATATT
ATTAAATAGTTAGAACGCGATTTTTCTAGTTTATCCTAAAACTAGTTTTAACCAATAATT
ACTTCATAAAACAGTAAATTGTGCATGTAATAAAGAATTTAAGTTAAAACTAGTTTTAAC
TAGACAAAACAGATAACACTAACTTTATACCTACTAAAAATCATCAAATCATTGTGGTAT
CGTAGATTTTACCCTTGCACTATAGTAAATTGTGCTTAATGAAACTATAGCTTTTTGGGG
AATTCGTTCAAGCGTTTGAGATTATTTTTTTAGTTAAATAATTTCAATAATGCTGCAAAC
AAATTTGGACTACATAACTTTAAGATTAAATATTATTACGATTTTTGGATTTCAGTAATA
TGGCTTAGCAGAAATAACCCATATTTTGAAATGTGTAAATGATTACCATAGTGTGTCTAC
TTAAAATATAATGAATAGTACAAGGTAATTTCTTTCATTTATTAAATTCATAACTCTGAT
AAAAC
(3725 bp)

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