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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2581 A_BomoFB_comp104593_c0_seq1
1290bp
 PREDICTED:_fanconi-associated_nuclease_1-like_[Amyelois_transitella]
FPKM:2.45 TPM:2.69
2582 A_BomoFB_comp104597_c0_seq1
1024bp
 PREDICTED:_HEAT_repeat-containing_protein_5B_[Bombyx_mori]
GO:0005515 F protein binding
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0070062 C extracellular exosome
FPKM:4.00 TPM:4.39
2583 A_BomoFB_comp10459_c0_seq1
4268bp
 endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006310 P DNA recombination
GO:0008152 P metabolic process
GO:0009036 F type II site-specific deoxyribonuclease activity
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0032197 P transposition, RNA-mediated
GO:0032199 P reverse transcription involved in RNA-mediated transposition
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:7.36 TPM:8.06
2584 A_BomoFB_comp104605_c0_seq1
676bp
 tRNA-dihydrouridine(47)_synthase_[NAD(P)(+)]_[Operophtera_brumata]
GO:0002943 P tRNA dihydrouridine synthesis
GO:0003824 F catalytic activity
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0016491 F oxidoreductase activity
GO:0017150 F tRNA dihydrouridine synthase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0050660 F flavin adenine dinucleotide binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:4.07 TPM:4.46
2585 A_BomoFB_comp10460_c0_seq1
2581bp
 PREDICTED:_uncharacterized_protein_LOC106718363_[Papilio_machaon]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:18.41 TPM:20.17
2586 A_BomoFB_comp1046195_c0_seq1
244bp
FPKM:0.00 TPM:0.00
2587 A_BomoFB_comp10461_c0_seq1
282bp
 titin2_[Bombyx_mori]
FPKM:20.43 TPM:22.38
2588 A_BomoFB_comp10461_c0_seq2
257bp
 titin2_[Bombyx_mori]
FPKM:63.75 TPM:69.85
2589 A_BomoFB_comp10461_c0_seq3
459bp
 titin2_[Bombyx_mori]
FPKM:357.04 TPM:391.22
2590 A_BomoFB_comp10461_c0_seq4
351bp
 titin2_[Bombyx_mori]
FPKM:20.81 TPM:22.80
2591 A_BomoFB_comp104628_c0_seq1
1275bp
 PREDICTED:_elongation_factor_Tu_GTP-binding_domain-containing_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0006412 P translation
GO:0008152 P metabolic process
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0043022 F ribosome binding
FPKM:3.38 TPM:3.70
2592 A_BomoFB_comp10462_c0_seq1
7037bp
 PREDICTED:_fatty_acid_synthase-like_[Bombyx_mori]
GO:0001649 P osteoblast differentiation
GO:0003824 F catalytic activity
GO:0004312 F fatty acid synthase activity
GO:0004313 F [acyl-carrier-protein] S-acetyltransferase activity
GO:0004314 F [acyl-carrier-protein] S-malonyltransferase activity
GO:0004315 F 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0004316 F 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0004317 F 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity
GO:0004319 F enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity
GO:0004320 F oleoyl-[acyl-carrier-protein] hydrolase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006084 P acetyl-CoA metabolic process
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008144 F obsolete drug binding
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0015939 P pantothenate metabolic process
GO:0016020 C membrane
GO:0016295 F myristoyl-[acyl-carrier-protein] hydrolase activity
GO:0016296 F palmitoyl-[acyl-carrier-protein] hydrolase activity
GO:0016297 F acyl-[acyl-carrier-protein] hydrolase activity
GO:0016491 F oxidoreductase activity
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0016829 F lyase activity
GO:0019171 F 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
GO:0030879 P mammary gland development
GO:0031177 F phosphopantetheine binding
GO:0031325 P positive regulation of cellular metabolic process
GO:0035338 P long-chain fatty-acyl-CoA biosynthetic process
GO:0042470 C melanosome
GO:0042587 C glycogen granule
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0047117 F enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity
GO:0047451 F 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070402 F NADPH binding
GO:0071353 P cellular response to interleukin-4
FPKM:13.87 TPM:15.20
2593 A_BomoFB_comp104633_c0_seq1
1592bp
 PREDICTED:_protein_lin-49,_partial_[Amyelois_transitella]
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0043966 P histone H3 acetylation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0070776 C MOZ/MORF histone acetyltransferase complex
GO:1901796 P regulation of signal transduction by p53 class mediator
FPKM:3.12 TPM:3.42
2594 A_BomoFB_comp104636_c0_seq1
1361bp
 PREDICTED:_ribonuclease_H1_[Plutella_xylostella]
GO:0000287 F magnesium ion binding
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006264 P mitochondrial DNA replication
GO:0016787 F hydrolase activity
GO:0042803 F protein homodimerization activity
GO:0043137 P DNA replication, removal of RNA primer
GO:0046872 F metal ion binding
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
FPKM:2.77 TPM:3.03
2595 A_BomoFB_comp10463_c0_seq1
2599bp
 PREDICTED:_putative_aldehyde_dehydrogenase_family_7_member_A1_homolog_[Amyelois_transitella]
GO:0004029 F aldehyde dehydrogenase (NAD+) activity
GO:0005575 C cellular_component
GO:0006081 P cellular aldehyde metabolic process
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0055114 P obsolete oxidation-reduction process
FPKM:204.65 TPM:224.24
2596 A_BomoFB_comp10463_c11_seq1
1379bp
FPKM:128.10 TPM:140.36
2597 A_BomoFB_comp10463_c11_seq10
606bp
 fatty_acid_synthase,_partial_[Agrotis_segetum]
GO:0001649 P osteoblast differentiation
GO:0003824 F catalytic activity
GO:0004312 F fatty acid synthase activity
GO:0004313 F [acyl-carrier-protein] S-acetyltransferase activity
GO:0004314 F [acyl-carrier-protein] S-malonyltransferase activity
GO:0004315 F 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0004316 F 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
GO:0004317 F 3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity
GO:0004319 F enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity
GO:0004320 F oleoyl-[acyl-carrier-protein] hydrolase activity
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006084 P acetyl-CoA metabolic process
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006633 P fatty acid biosynthetic process
GO:0008144 F obsolete drug binding
GO:0008152 P metabolic process
GO:0009058 P biosynthetic process
GO:0016020 C membrane
GO:0016295 F myristoyl-[acyl-carrier-protein] hydrolase activity
GO:0016296 F palmitoyl-[acyl-carrier-protein] hydrolase activity
GO:0016297 F acyl-[acyl-carrier-protein] hydrolase activity
GO:0016491 F oxidoreductase activity
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0016788 F hydrolase activity, acting on ester bonds
GO:0016829 F lyase activity
GO:0019171 F 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity
GO:0030879 P mammary gland development
GO:0031177 F phosphopantetheine binding
GO:0042470 C melanosome
GO:0042587 C glycogen granule
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0047117 F enoyl-[acyl-carrier-protein] reductase (NADPH, A-specific) activity
GO:0047451 F 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070062 C extracellular exosome
GO:0070402 F NADPH binding
GO:0071353 P cellular response to interleukin-4
FPKM:0.00 TPM:0.00
2598 A_BomoFB_comp10463_c11_seq11
259bp
FPKM:0.92 TPM:1.01
2599 A_BomoFB_comp10463_c11_seq12
3115bp
 PREDICTED:_malate_dehydrogenase_isoform_X1_[Bombyx_mori]
GO:0004470 F malic enzyme activity
GO:0004471 F malate dehydrogenase (decarboxylating) (NAD+) activity
GO:0004473 F malate dehydrogenase (decarboxylating) (NADP+) activity
GO:0005737 C cytoplasm
GO:0006108 P malate metabolic process
GO:0008948 F oxaloacetate decarboxylase activity
GO:0016491 F oxidoreductase activity
GO:0046872 F metal ion binding
GO:0051287 F NAD binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.24 TPM:0.27
2600 A_BomoFB_comp10463_c11_seq13
2152bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_cytochrome_P450_6B5-like_[Bombyx_mori]
GO:0004497 F monooxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0016020 C membrane
GO:0016491 F oxidoreductase activity
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 F heme binding
GO:0031090 C organelle membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0046872 F metal ion binding
GO:0055114 P obsolete oxidation-reduction process
GO:0070330 F aromatase activity
FPKM:110.94 TPM:121.56
2601 A_BomoFB_comp10463_c11_seq14
1531bp
 PREDICTED:_intraflagellar_transport_protein_52_homolog_[Bombyx_mori]
GO:0001841 P neural tube formation
GO:0001947 P heart looping
GO:0005515 F protein binding
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0007368 P determination of left/right symmetry
GO:0009953 P dorsal/ventral pattern formation
GO:0030992 C intraciliary transport particle B
GO:0032391 C photoreceptor connecting cilium
GO:0036064 C ciliary basal body
GO:0042073 P intraciliary transport
GO:0042733 P embryonic digit morphogenesis
GO:0042995 C cell projection
GO:0044292 C dendrite terminus
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0060271 P cilium assembly
GO:0070613 P regulation of protein processing
GO:0072372 C cilium
GO:0097542 C ciliary tip
GO:0097546 C ciliary base
FPKM:37.44 TPM:41.02
2602 A_BomoFB_comp10463_c11_seq15
1713bp
 PREDICTED:_scavenger_receptor_class_B_member_1-like_isoform_X4_[Bombyx_mori]
GO:0004872 F signaling receptor activity
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005925 C focal adhesion
GO:0006622 P protein targeting to lysosome
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019899 F enzyme binding
GO:0043202 C lysosomal lumen
GO:0070062 C extracellular exosome
FPKM:1.64 TPM:1.80
2603 A_BomoFB_comp10463_c11_seq16
1022bp
FPKM:1.15 TPM:1.26
2604 A_BomoFB_comp10463_c11_seq17
1164bp
FPKM:0.00 TPM:0.00
2605 A_BomoFB_comp10463_c11_seq18
1580bp
 Rho-associated_protein_kinase_[Bombyx_mori]
FPKM:7.45 TPM:8.16
2606 A_BomoFB_comp10463_c11_seq19
225bp
FPKM:88.94 TPM:97.45
2607 A_BomoFB_comp10463_c11_seq2
2397bp
 PREDICTED:_intraflagellar_transport_protein_52_homolog_[Bombyx_mori]
GO:0001841 P neural tube formation
GO:0001947 P heart looping
GO:0005515 F protein binding
GO:0005813 C centrosome
GO:0005814 C centriole
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0007368 P determination of left/right symmetry
GO:0009953 P dorsal/ventral pattern formation
GO:0030992 C intraciliary transport particle B
GO:0032391 C photoreceptor connecting cilium
GO:0036064 C ciliary basal body
GO:0042073 P intraciliary transport
GO:0042733 P embryonic digit morphogenesis
GO:0042995 C cell projection
GO:0044292 C dendrite terminus
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0060271 P cilium assembly
GO:0070613 P regulation of protein processing
GO:0072372 C cilium
GO:0097542 C ciliary tip
GO:0097546 C ciliary base
FPKM:39.47 TPM:43.25
2608 A_BomoFB_comp10463_c11_seq20
218bp
 putative_atp-dependent_rna_helicase_ddx58_[Ascaris_suum]
FPKM:0.00 TPM:0.00
2609 A_BomoFB_comp10463_c11_seq21
1839bp
 Rho-associated_protein_kinase_[Bombyx_mori]
FPKM:0.07 TPM:0.08
2610 A_BomoFB_comp10463_c11_seq22
3193bp
FPKM:200.30 TPM:219.47
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