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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1411 A_BomoFB_comp1032103_c0_seq1
220bp
FPKM:1.20 TPM:1.32
1412 A_BomoFB_comp10321_c0_seq1
2004bp
 PREDICTED:_uncharacterized_protein_K02A2.6-like_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0046872 F metal ion binding
FPKM:3.25 TPM:3.56
1413 A_BomoFB_comp10321_c0_seq2
237bp
 PREDICTED:_uncharacterized_protein_LOC106132513_[Amyelois_transitella]
FPKM:0.91 TPM:1.00
1414 A_BomoFB_comp10322_c0_seq1
218bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Camponotus_floridanus]
FPKM:0.00 TPM:0.00
1415 A_BomoFB_comp10322_c0_seq2
204bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Camponotus_floridanus]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:0.00 TPM:0.00
1416 A_BomoFB_comp10322_c0_seq3
234bp
 transposase_[Attacus_atlas]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:3.49 TPM:3.83
1417 A_BomoFB_comp10322_c0_seq4
249bp
 PREDICTED:_histone-lysine_N-methyltransferase_SETMAR-like_[Camponotus_floridanus]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:3.09 TPM:3.39
1418 A_BomoFB_comp10322_c0_seq5
283bp
 hypothetical_protein_[Escherichia_coli]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:1.78 TPM:1.95
1419 A_BomoFB_comp10323_c0_seq1
1298bp
 heterogeneous_nuclear_ribonucleoprotein_A1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0030529 C ribonucleoprotein complex
FPKM:14.53 TPM:15.92
1420 A_BomoFB_comp10323_c0_seq2
2036bp
 heterogeneous_nuclear_ribonucleoprotein_A1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0030529 C ribonucleoprotein complex
FPKM:5.64 TPM:6.19
1421 A_BomoFB_comp10323_c0_seq3
1068bp
FPKM:3.43 TPM:3.76
1422 A_BomoFB_comp10324_c0_seq1
298bp
 NADPH_oxidoreductase_[Bombyx_mori]
FPKM:0.00 TPM:0.00
1423 A_BomoFB_comp10324_c0_seq10
484bp
 putative_pol-like_protein_[Danaus_plexippus]
FPKM:9.84 TPM:10.78
1424 A_BomoFB_comp10324_c0_seq2
643bp
 putative_pol-like_protein_[Danaus_plexippus]
FPKM:2.31 TPM:2.54
1425 A_BomoFB_comp10324_c0_seq3
459bp
FPKM:1.18 TPM:1.29
1426 A_BomoFB_comp10324_c0_seq4
561bp
FPKM:1.52 TPM:1.67
1427 A_BomoFB_comp10324_c0_seq5
291bp
FPKM:3.55 TPM:3.89
1428 A_BomoFB_comp10324_c0_seq6
760bp
 putative_pol-like_protein_[Danaus_plexippus]
FPKM:0.42 TPM:0.46
1429 A_BomoFB_comp10324_c0_seq7
507bp
 PREDICTED:_uncharacterized_protein_LOC107071962_[Polistes_dominula]
FPKM:1.34 TPM:1.47
1430 A_BomoFB_comp10324_c0_seq8
401bp
 NADPH_oxidoreductase_[Bombyx_mori]
FPKM:1.32 TPM:1.44
1431 A_BomoFB_comp10324_c0_seq9
337bp
 putative_pol-like_protein_[Danaus_plexippus]
FPKM:8.91 TPM:9.76
1432 A_BomoFB_comp10324_c1_seq1
981bp
 putative_pol-like_protein_[Danaus_plexippus]
FPKM:2.11 TPM:2.31
1433 A_BomoFB_comp10325_c0_seq1
907bp
 PREDICTED:_low_molecular_mass_30_kDa_lipoprotein_19G1-like_isoform_X1_[Bombyx_mori]
GO:0005576 C extracellular region
FPKM:114206.06 TPM:125137.87
1434 A_BomoFB_comp103265_c0_seq1
265bp
 glutamate_transporter_[Bombyx_mori]
FPKM:1.28 TPM:1.40
1435 A_BomoFB_comp10326_c0_seq1
827bp
 putative_pol-like_protein_[Danaus_plexippus]
GO:0003964 F RNA-directed DNA polymerase activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006313 P transposition, DNA-mediated
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
FPKM:9.36 TPM:10.25
1436 A_BomoFB_comp10327_c0_seq1
255bp
FPKM:2.15 TPM:2.36
1437 A_BomoFB_comp10327_c1_seq1
1077bp
 putative_RNA-directed_DNA_polymerase_from_transposon_BS-like_Protein_[Tribolium_castaneum]
FPKM:0.82 TPM:0.89
1438 A_BomoFB_comp10327_c1_seq2
1138bp
 PREDICTED:_uncharacterized_protein_LOC103309415_[Acyrthosiphon_pisum]
FPKM:1.49 TPM:1.63
1439 A_BomoFB_comp10327_c1_seq3
660bp
FPKM:4.45 TPM:4.88
1440 A_BomoFB_comp10327_c1_seq4
413bp
 putative_RNA-directed_DNA_polymerase_from_transposon_BS-like_Protein_[Tribolium_castaneum]
FPKM:0.00 TPM:0.00
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