SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/221677
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
5821 A_BomoEE_comp1094243_c0_seq1
214bp
 PREDICTED:_mucin-17-like_isoform_X4_[Bombyx_mori]
FPKM:0.66 TPM:1.15
5822 A_BomoEE_comp1094260_c0_seq1
218bp
FPKM:0.15 TPM:0.27
5823 A_BomoEE_comp1094292_c0_seq1
481bp
 hypothetical_protein_[Bacillus_sp._FJAT-28004]
FPKM:0.24 TPM:0.41
5824 A_BomoEE_comp10942_c0_seq1
323bp
 hypothetical_protein_T07_8243_[Trichinella_nelsoni]
FPKM:0.22 TPM:0.38
5825 A_BomoEE_comp1094305_c0_seq1
262bp
 tRNA_methyltransferase_[Plasmodium_vivax_North_Korean]
FPKM:0.53 TPM:0.93
5826 A_BomoEE_comp1094334_c0_seq1
334bp
FPKM:0.30 TPM:0.53
5827 A_BomoEE_comp109435_c0_seq1
2561bp
 PREDICTED:_spectrin_beta_chain,_non-erythrocytic_5_[Bombyx_mori]
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005938 C cell cortex
GO:0046872 F metal ion binding
GO:0051693 P actin filament capping
FPKM:5.27 TPM:9.20
5828 A_BomoEE_comp1094407_c0_seq1
687bp
FPKM:0.27 TPM:0.47
5829 A_BomoEE_comp1094419_c0_seq1
342bp
FPKM:0.34 TPM:0.59
5830 A_BomoEE_comp109446_c0_seq1
1531bp
 PREDICTED:_LOW_QUALITY_PROTEIN:_ufm1-specific_protease_2-like_[Papilio_machaon]
FPKM:7.02 TPM:12.24
5831 A_BomoEE_comp1094494_c0_seq1
526bp
FPKM:0.16 TPM:0.28
5832 A_BomoEE_comp1094513_c0_seq1
355bp
FPKM:0.09 TPM:0.16
5833 A_BomoEE_comp1094579_c0_seq1
341bp
 PREDICTED:_NF-kappa-B_inhibitor_delta_[Austrofundulus_limnaeus]
FPKM:0.39 TPM:0.67
5834 A_BomoEE_comp109457_c0_seq1
421bp
 nitrate_ABC_transporter_ATP-binding_protein_[Proteocatella_sphenisci]
FPKM:9.19 TPM:16.03
5835 A_BomoEE_comp1094599_c0_seq1
567bp
FPKM:0.16 TPM:0.29
5836 A_BomoEE_comp1094605_c0_seq1
359bp
 hypothetical_protein_Z517_11088_[Fonsecaea_pedrosoi_CBS_271.37]
FPKM:0.26 TPM:0.46
5837 A_BomoEE_comp1094686_c0_seq1
672bp
 Alpha/beta_hydrolase_fold-1_[Cynara_cardunculus_var._scolymus]
FPKM:0.15 TPM:0.25
5838 A_BomoEE_comp109474_c0_seq1
325bp
FPKM:6.34 TPM:11.06
5839 A_BomoEE_comp1094789_c0_seq1
314bp
FPKM:0.29 TPM:0.50
5840 A_BomoEE_comp1094861_c0_seq1
726bp
 transposase,_partial_[Cadra_cautella]
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000729 P DNA double-strand break processing
GO:0000737 P DNA catabolic process, endonucleolytic
GO:0000793 C condensed chromosome
GO:0003677 F DNA binding
GO:0003690 F double-stranded DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0006281 P DNA repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008168 F methyltransferase activity
GO:0008270 F zinc ion binding
GO:0008283 P cell population proliferation
GO:0010452 P histone H3-K36 methylation
GO:0015074 P DNA integration
GO:0016568 P chromatin organization
GO:0016740 F transferase activity
GO:0016787 F hydrolase activity
GO:0018024 F histone-lysine N-methyltransferase activity
GO:0031297 P replication fork processing
GO:0032259 P methylation
GO:0034968 P histone lysine methylation
GO:0035861 C site of double-strand break
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0044547 F DNA topoisomerase binding
GO:0044774 P mitotic DNA integrity checkpoint signaling
GO:0046872 F metal ion binding
GO:0046975 F histone methyltransferase activity (H3-K36 specific)
GO:0051568 P histone H3-K4 methylation
GO:0071157 P regulation of cell cycle
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0097676 P histone H3-K36 dimethylation
GO:2000373 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
GO:2001034 P positive regulation of double-strand break repair via nonhomologous end joining
GO:2001251 P negative regulation of chromosome organization
FPKM:0.23 TPM:0.41
5841 A_BomoEE_comp1094879_c0_seq1
296bp
FPKM:0.39 TPM:0.68
5842 A_BomoEE_comp1094900_c0_seq1
427bp
 protein_hydE_[Helicobacter_pylori]
FPKM:0.32 TPM:0.56
5843 A_BomoEE_comp109492_c0_seq1
227bp
FPKM:0.00 TPM:0.00
5844 A_BomoEE_comp109493_c0_seq1
530bp
FPKM:8.28 TPM:14.44
5845 A_BomoEE_comp1094948_c0_seq1
350bp
 hypothetical_protein_[Lachnospiraceae_bacterium_3_1_46FAA]
FPKM:0.14 TPM:0.24
5846 A_BomoEE_comp1094950_c0_seq1
299bp
FPKM:0.13 TPM:0.22
5847 A_BomoEE_comp1094958_c0_seq1
347bp
FPKM:0.09 TPM:0.16
5848 A_BomoEE_comp1094969_c0_seq1
211bp
FPKM:0.35 TPM:0.60
5849 A_BomoEE_comp109496_c0_seq1
978bp
 PREDICTED:_talin-1_[Bombyx_mori]
GO:0001726 C ruffle
GO:0003779 F actin binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007016 P obsolete cytoskeletal anchoring at plasma membrane
GO:0007155 P cell adhesion
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0032587 C ruffle membrane
GO:0042995 C cell projection
GO:0051015 F actin filament binding
FPKM:6.89 TPM:12.01
5850 A_BomoEE_comp1094_c0_seq1
659bp
FPKM:0.17 TPM:0.29
previous next from show/221677

- SilkBase 1999-2023 -