SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/39865
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
7051 A_BomaMG_comp16521_c0_seq1
1734bp
antennal_esterase_CXE11_[Spodoptera_littoralis]
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0052689 F carboxylic ester hydrolase activity
FPKM:9.46 TPM:8.76
7052 A_BomaMG_comp16522_c0_seq1
616bp
PREDICTED:_peritrophin-1-like_[Amyelois_transitella]
FPKM:1.79 TPM:1.66
7053 A_BomaMG_comp16522_c1_seq1
291bp
FPKM:1.52 TPM:1.41
7054 A_BomaMG_comp16522_c2_seq1
253bp
PREDICTED:_peritrophin-1-like_[Amyelois_transitella]
FPKM:3.14 TPM:2.91
7055 A_BomaMG_comp16523_c0_seq1
242bp
neuropeptide_receptor_A20_[Bombyx_mori]
FPKM:2.06 TPM:1.91
7056 A_BomaMG_comp16523_c1_seq1
283bp
neuropeptide_receptor_A20_[Bombyx_mori]
FPKM:1.64 TPM:1.52
7057 A_BomaMG_comp16524_c0_seq1
6987bp
myocyte_enhancing_factor_2_isoform_B_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007496 P anterior midgut development
GO:0007498 P mesoderm development
GO:0007507 P heart development
GO:0007517 P muscle organ development
GO:0007519 P skeletal muscle tissue development
GO:0007520 P myoblast fusion
GO:0010468 P regulation of gene expression
GO:0016202 P regulation of striated muscle tissue development
GO:0019730 P antimicrobial humoral response
GO:0019915 P lipid storage
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045475 P locomotor rhythm
GO:0046983 F protein dimerization activity
GO:0048747 P muscle cell development
GO:0052576 P carbohydrate storage
FPKM:5.08 TPM:4.71
7058 A_BomaMG_comp16524_c0_seq2
6999bp
myocyte_enhancing_factor_2_isoform_A_[Bombyx_mori]
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007496 P anterior midgut development
GO:0007498 P mesoderm development
GO:0007507 P heart development
GO:0007517 P muscle organ development
GO:0007519 P skeletal muscle tissue development
GO:0007520 P myoblast fusion
GO:0010468 P regulation of gene expression
GO:0016202 P regulation of striated muscle tissue development
GO:0019730 P antimicrobial humoral response
GO:0019915 P lipid storage
GO:0030154 P cell differentiation
GO:0030707 P ovarian follicle cell development
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0045475 P locomotor rhythm
GO:0046983 F protein dimerization activity
GO:0048747 P muscle cell development
GO:0052576 P carbohydrate storage
FPKM:0.59 TPM:0.55
7059 A_BomaMG_comp16525_c0_seq1
684bp
PREDICTED:_uncharacterized_protein_LOC101746156_[Bombyx_mori]
FPKM:141.28 TPM:130.82
7060 A_BomaMG_comp165267_c0_seq1
558bp
FPKM:1.08 TPM:1.00
7061 A_BomaMG_comp16526_c0_seq1
366bp
uncharacterized_protein_LOC101741444_[Bombyx_mori]
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.47 TPM:1.36
7062 A_BomaMG_comp16527_c0_seq1
368bp
FPKM:1.27 TPM:1.18
7063 A_BomaMG_comp16527_c1_seq1
273bp
hypothetical_protein_[Flavobacterium_sp._Root420]
FPKM:0.36 TPM:0.33
7064 A_BomaMG_comp16528_c0_seq1
251bp
FPKM:11.95 TPM:11.07
7065 A_BomaMG_comp16528_c1_seq1
1742bp
PREDICTED:_afadin_[Bombyx_mori]
FPKM:6.85 TPM:6.34
7066 A_BomaMG_comp16529_c0_seq1
231bp
hypothetical_protein_CC1_11730_[Coprococcus_catus_GD/7]
FPKM:1.21 TPM:1.12
7067 A_BomaMG_comp16529_c1_seq1
251bp
FPKM:0.92 TPM:0.85
7068 A_BomaMG_comp1652_c0_seq1
284bp
FPKM:1.30 TPM:1.20
7069 A_BomaMG_comp165306_c0_seq1
674bp
FPKM:1.79 TPM:1.66
7070 A_BomaMG_comp16530_c0_seq1
267bp
unnamed_protein_product,_partial_[Tetraodon_nigroviridis]
FPKM:1.15 TPM:1.06
7071 A_BomaMG_comp16531_c0_seq1
212bp
hypothetical_protein_ACH46_01055_[Gordonia_sp._QH-11]
FPKM:2.52 TPM:2.33
7072 A_BomaMG_comp16533_c0_seq1
241bp
Lysocardiolipin_acyltransferase_1,_partial_[Operophtera_brumata]
FPKM:1.57 TPM:1.45
7073 A_BomaMG_comp16534_c0_seq1
213bp
FPKM:1.64 TPM:1.52
7074 A_BomaMG_comp16535_c0_seq1
762bp
PREDICTED:_vacuolar_protein_sorting_29_isoform_X1_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0008565 F obsolete protein transporter activity
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030904 C retromer complex
GO:0042147 P retrograde transport, endosome to Golgi
GO:0046872 F metal ion binding
FPKM:11.20 TPM:10.37
7075 A_BomaMG_comp165366_c0_seq1
266bp
FPKM:1.16 TPM:1.08
7076 A_BomaMG_comp16537_c0_seq1
543bp
PREDICTED:_sorting_nexin-25_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005768 C endosome
GO:0006810 P transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0032801 P receptor catabolic process
GO:0034713 F type I transforming growth factor beta receptor binding
GO:0035091 F phosphatidylinositol binding
GO:0060394 P negative regulation of pathway-restricted SMAD protein phosphorylation
FPKM:0.75 TPM:0.69
7077 A_BomaMG_comp16537_c1_seq1
1016bp
PREDICTED:_sorting_nexin-25_[Amyelois_transitella]
GO:0005768 C endosome
GO:0006810 P transport
GO:0010008 C endosome membrane
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0032801 P receptor catabolic process
GO:0034713 F type I transforming growth factor beta receptor binding
GO:0035091 F phosphatidylinositol binding
GO:0060394 P negative regulation of pathway-restricted SMAD protein phosphorylation
FPKM:1.46 TPM:1.35
7078 A_BomaMG_comp16538_c0_seq1
309bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:0.53 TPM:0.49
7079 A_BomaMG_comp16538_c1_seq1
258bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005737 C cytoplasm
FPKM:0.42 TPM:0.39
7080 A_BomaMG_comp16539_c0_seq1
228bp
FPKM:0.63 TPM:0.59
previous next from show/39865

- SilkBase 1999-2023 -