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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
61 A_BomaMG_comp101279_c0_seq1
2112bp
PREDICTED:_mediator_of_RNA_polymerase_II_transcription_subunit_12_[Bombyx_mori]
GO:0001104 F transcription coregulator activity
GO:0001105 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0007275 P multicellular organism development
GO:0007406 P negative regulation of neuroblast proliferation
GO:0016592 C mediator complex
GO:0022416 P chaeta development
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0035072 P ecdysone-mediated induction of salivary gland cell autophagic cell death
GO:0036011 P imaginal disc-derived leg segmentation
GO:0045498 P sex comb development
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048749 P compound eye development
GO:0070847 C core mediator complex
FPKM:3.05 TPM:2.82
62 A_BomaMG_comp101305_c0_seq1
3556bp
PREDICTED:_protein_toll-like_isoform_X1_[Bombyx_mori]
GO:0000281 P mitotic cytokinesis
GO:0002229 P defense response to oomycetes
GO:0002376 P immune system process
GO:0004888 F transmembrane signaling receptor activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006952 P defense response
GO:0006955 P immune response
GO:0006963 P positive regulation of antibacterial peptide biosynthetic process
GO:0006967 P positive regulation of antifungal peptide biosynthetic process
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0007352 P zygotic specification of dorsal/ventral axis
GO:0007416 P synapse assembly
GO:0007507 P heart development
GO:0008063 P Toll signaling pathway
GO:0009617 P response to bacterium
GO:0009620 P response to fungus
GO:0009880 P embryonic pattern specification
GO:0009897 C external side of plasma membrane
GO:0009950 P dorsal/ventral axis specification
GO:0009986 C cell surface
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016201 P synaptic target inhibition
GO:0019730 P antimicrobial humoral response
GO:0019732 P antifungal humoral response
GO:0019955 F cytokine binding
GO:0030097 P hemopoiesis
GO:0032154 C cleavage furrow
GO:0035007 P regulation of melanization defense response
GO:0035172 P hemocyte proliferation
GO:0042802 F identical protein binding
GO:0043234 C protein-containing complex
GO:0045087 P innate immune response
GO:0045610 P regulation of hemocyte differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050830 P defense response to Gram-positive bacterium
GO:0050832 P defense response to fungus
GO:0070976 F TIR domain binding
GO:1902875 P regulation of embryonic pattern specification
FPKM:2.45 TPM:2.26
63 A_BomaMG_comp10139_c0_seq1
342bp
PREDICTED:_WD_repeat-containing_protein_89_[Plutella_xylostella]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.26 TPM:1.17
64 A_BomaMG_comp1013_c0_seq1
519bp
PREDICTED:_leucine-rich_repeat_serine/threonine-protein_kinase_1_[Bombyx_mori]
GO:0005634 C nucleus
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
FPKM:1.00 TPM:0.93
65 A_BomaMG_comp10140_c0_seq1
307bp
PREDICTED:_uncharacterized_protein_LOC105841874_[Bombyx_mori]
FPKM:0.80 TPM:0.74
66 A_BomaMG_comp10141_c0_seq1
561bp
PREDICTED:_testis-expressed_sequence_10_protein_homolog_[Amyelois_transitella]
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0071339 C MLL1 complex
FPKM:1.52 TPM:1.41
67 A_BomaMG_comp10142_c0_seq1
223bp
FPKM:1.37 TPM:1.27
68 A_BomaMG_comp10149_c0_seq1
214bp
nitric_oxide_synthase-like_protein_[Bombyx_mori]
GO:0004517 F nitric-oxide synthase activity
GO:0005506 F iron ion binding
GO:0005516 F calmodulin binding
GO:0006809 P nitric oxide biosynthetic process
GO:0010181 F FMN binding
GO:0016491 F oxidoreductase activity
GO:0020037 F heme binding
GO:0046872 F metal ion binding
GO:0050660 F flavin adenine dinucleotide binding
GO:0050661 F NADP binding
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.61 TPM:1.49
69 A_BomaMG_comp1014_c0_seq1
311bp
FPKM:1.56 TPM:1.44
70 A_BomaMG_comp101504_c0_seq1
246bp
PREDICTED:_target_of_rapamycin_complex_subunit_lst8_isoform_X1_[Bombyx_mori]
FPKM:6.85 TPM:6.35
71 A_BomaMG_comp101511_c0_seq1
1187bp
FPKM:2.56 TPM:2.37
72 A_BomaMG_comp101536_c0_seq1
468bp
PREDICTED:_uncharacterized_protein_LOC101736207_[Bombyx_mori]
FPKM:3.55 TPM:3.29
73 A_BomaMG_comp101582_c0_seq1
1552bp
mitochondrial_aldehyde_dehydrogenase_[Bombyx_mori]
GO:0004029 F aldehyde dehydrogenase (NAD+) activity
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0005975 P carbohydrate metabolic process
GO:0006068 P ethanol catabolic process
GO:0006069 P ethanol oxidation
GO:0008152 P metabolic process
GO:0016491 F oxidoreductase activity
GO:0016620 F oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0043231 C intracellular membrane-bounded organelle
GO:0055114 P obsolete oxidation-reduction process
FPKM:2.59 TPM:2.40
74 A_BomaMG_comp1015_c0_seq1
353bp
FPKM:1.18 TPM:1.10
75 A_BomaMG_comp101627_c0_seq1
645bp
mobilization_protein_[Streptomyces_fulvissimus]
FPKM:3.65 TPM:3.38
76 A_BomaMG_comp10164_c0_seq1
257bp
PREDICTED:_endocuticle_structural_glycoprotein_ABD-5-like_[Amyelois_transitella]
FPKM:0.86 TPM:0.79
77 A_BomaMG_comp101666_c0_seq1
395bp
PREDICTED:_calponin_homology_domain-containing_protein_DDB_G0272472-like_[Bombyx_mori]
FPKM:4.29 TPM:3.97
78 A_BomaMG_comp101667_c0_seq1
430bp
FPKM:2.73 TPM:2.53
79 A_BomaMG_comp101668_c0_seq1
1265bp
PREDICTED:_histone_acetyltransferase_KAT2A_[Papilio_xuthus]
GO:0000123 C histone acetyltransferase complex
GO:0000790 C chromatin
GO:0001701 P in utero embryonic development
GO:0001756 P somitogenesis
GO:0001843 P neural tube closure
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0008080 F N-acetyltransferase activity
GO:0008134 F transcription factor binding
GO:0008283 P cell population proliferation
GO:0010484 F H3 histone acetyltransferase activity
GO:0014070 P response to organic cyclic compound
GO:0016032 P viral process
GO:0016407 F acetyltransferase activity
GO:0016573 P histone acetylation
GO:0016578 P histone deubiquitination
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0019903 F protein phosphatase binding
GO:0021537 P telencephalon development
GO:0022037 P metencephalon development
GO:0030901 P midbrain development
GO:0030914 C SAGA complex
GO:0031346 P positive regulation of cell projection organization
GO:0031647 P regulation of protein stability
GO:0031667 P response to nutrient levels
GO:0033276 C transcription factor TFTC complex
GO:0035066 P positive regulation of histone acetylation
GO:0035264 P multicellular organism growth
GO:0035948 P obsolete positive regulation of gluconeogenesis by positive regulation of transcription from RNA polymerase II promoter
GO:0042826 F histone deacetylase binding
GO:0043966 P histone H3 acetylation
GO:0043983 P histone H4-K12 acetylation
GO:0043997 F histone acetyltransferase activity (H4-K12 specific)
GO:0044154 P histone H3-K14 acetylation
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0048312 P intracellular distribution of mitochondria
GO:0055007 P cardiac muscle cell differentiation
GO:0071356 P cellular response to tumor necrosis factor
GO:0071929 P alpha-tubulin acetylation
GO:0072686 C mitotic spindle
GO:1903146 P regulation of autophagy of mitochondrion
GO:1903955 P positive regulation of protein targeting to mitochondrion
GO:1990090 P cellular response to nerve growth factor stimulus
GO:2000679 P positive regulation of transcription regulatory region DNA binding
FPKM:2.59 TPM:2.40
80 A_BomaMG_comp1016_c0_seq1
348bp
PREDICTED:_checkpoint_protein_HUS1_[Amyelois_transitella]
GO:0000077 P DNA damage checkpoint signaling
GO:0000724 P double-strand break repair via homologous recombination
GO:0001932 P regulation of protein phosphorylation
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007093 P mitotic cell cycle checkpoint signaling
GO:0008156 P negative regulation of DNA replication
GO:0009411 P response to UV
GO:0009790 P embryo development
GO:0030896 C checkpoint clamp complex
GO:0031573 P mitotic intra-S DNA damage checkpoint signaling
GO:0033314 P mitotic DNA replication checkpoint signaling
GO:0035861 C site of double-strand break
GO:0044778 P meiotic DNA integrity checkpoint signaling
GO:0071479 P cellular response to ionizing radiation
GO:1901796 P regulation of signal transduction by p53 class mediator
FPKM:1.63 TPM:1.50
81 A_BomaMG_comp101782_c0_seq1
308bp
FPKM:2.12 TPM:1.97
82 A_BomaMG_comp101814_c0_seq1
947bp
Protein_phosphatase_2c_[Operophtera_brumata]
FPKM:2.87 TPM:2.66
83 A_BomaMG_comp10183_c0_seq1
231bp
FPKM:1.21 TPM:1.12
84 A_BomaMG_comp10183_c1_seq1
203bp
FPKM:2.02 TPM:1.87
85 A_BomaMG_comp101845_c0_seq1
901bp
PREDICTED:_probable_phospholipid-transporting_ATPase_IA_isoform_X2_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007612 P learning
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0019829 F ATPase-coupled cation transmembrane transporter activity
GO:0030335 P positive regulation of cell migration
GO:0031410 C cytoplasmic vesicle
GO:0034220 P ion transmembrane transport
GO:0042584 C chromaffin granule membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
GO:0048194 P Golgi vesicle budding
GO:0061092 P positive regulation of phospholipid translocation
GO:0070062 C extracellular exosome
GO:0098655 P cation transmembrane transport
FPKM:3.34 TPM:3.09
86 A_BomaMG_comp101887_c0_seq1
519bp
PREDICTED:_uncharacterized_protein_LOC101739231_[Bombyx_mori]
FPKM:5.22 TPM:4.84
87 A_BomaMG_comp10188_c0_seq1
205bp
FPKM:1.93 TPM:1.79
88 A_BomaMG_comp10192_c0_seq1
313bp
PREDICTED:_oocyte_zinc_finger_protein_XlCOF28_[Bombyx_mori]
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007601 P visual perception
GO:0007605 P sensory perception of sound
GO:0009649 P entrainment of circadian clock
GO:0010114 P response to red light
GO:0035271 P ring gland development
GO:0042051 P compound eye photoreceptor development
GO:0043153 P entrainment of circadian clock by photoperiod
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0050896 P response to stimulus
GO:0060086 P circadian temperature homeostasis
FPKM:1.53 TPM:1.42
89 A_BomaMG_comp10198_c0_seq1
237bp
Organic_radical_activating_enzyme_[Methanocella_conradii]
FPKM:1.66 TPM:1.54
90 A_BomaMG_comp1019_c0_seq1
334bp
PREDICTED:_oocyte_zinc_finger_protein_XlCOF26-like_isoform_X2_[Bombyx_mori]
FPKM:1.55 TPM:1.44
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