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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

5041

A_BomaMG_comp149086_c0_seq1

554bp

PREDICTED:_protein_downstream_neighbor_of_son_homolog_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005634	C	nucleus
GO:0007049	P	cell cycle
GO:0007275	P	multicellular organism development
GO:0007307	P	eggshell chorion gene amplification
GO:0008283	P	cell population proliferation
GO:0033260	P	nuclear DNA replication
GO:0051301	P	cell division

FPKM:2.00 TPM:1.85

5042

A_BomaMG_comp14908_c0_seq1

245bp

FPKM:3.47 TPM:3.21

5043

A_BomaMG_comp1490_c0_seq1

252bp

FPKM:0.91 TPM:0.84

5044

A_BomaMG_comp149108_c0_seq1

340bp

hypothetical_protein_ACAM_0221_[Aeropyrum_camini_SY1_=_JCM_12091]

FPKM:2.56 TPM:2.37

5045

A_BomaMG_comp149120_c0_seq1

1202bp

FPKM:1.72 TPM:1.60

5046

A_BomaMG_comp14912_c0_seq1

330bp

hypothetical_protein_BN1356_02546_[Streptococcus_sp._FF10]

FPKM:1.59 TPM:1.47

5047

A_BomaMG_comp149132_c0_seq1

459bp

PREDICTED:_homer_protein_homolog_2-like,_partial_[Papilio_machaon]

GO:0003009	P	skeletal muscle contraction
GO:0005737	C	cytoplasm
GO:0005886	C	plasma membrane
GO:0014069	C	postsynaptic density
GO:0016020	C	membrane
GO:0030018	C	Z disc
GO:0030054	C	cell junction
GO:0030424	C	axon
GO:0035256	F	G protein-coupled glutamate receptor binding
GO:0043005	C	neuron projection
GO:0043034	C	costamere
GO:0044325	F	transmembrane transporter binding
GO:0045177	C	apical part of cell
GO:0045202	C	synapse
GO:0045211	C	postsynaptic membrane
GO:0048148	P	behavioral response to cocaine
GO:0048741	P	skeletal muscle fiber development
GO:0048875	P	chemical homeostasis within a tissue
GO:0051592	P	response to calcium ion
GO:0051928	P	positive regulation of calcium ion transport
GO:0090279	P	regulation of calcium ion import
GO:0097481	C	postsynaptic density
GO:2001256	P	regulation of store-operated calcium entry
GO:2001257	P	regulation of cation channel activity

FPKM:2.32 TPM:2.15

5048

A_BomaMG_comp14913_c0_seq1

233bp

endonuclease-reverse_transcriptase_[Bombyx_mori]

FPKM:1.17 TPM:1.09

5049

A_BomaMG_comp14914_c0_seq1

423bp

PREDICTED:_TATA-binding_protein-associated_factor_172_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0004386	F	helicase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005654	C	nucleoplasm
GO:0008152	P	metabolic process
GO:0016787	F	hydrolase activity
GO:0035562	P	negative regulation of chromatin binding
GO:0043231	C	intracellular membrane-bounded organelle
GO:0045892	P	negative regulation of transcription, DNA-templated

FPKM:4.77 TPM:4.42

5050

A_BomaMG_comp14915_c0_seq1

315bp

FPKM:1.76 TPM:1.63

5051

A_BomaMG_comp14916_c0_seq1

344bp

FPKM:1.25 TPM:1.16

5052

A_BomaMG_comp14917_c0_seq1

281bp

FPKM:1.67 TPM:1.54

5053

A_BomaMG_comp149182_c0_seq1

399bp

PREDICTED:_uncharacterized_protein_LOC101738377_isoform_X1_[Bombyx_mori]

FPKM:1.56 TPM:1.44

5054

A_BomaMG_comp149193_c0_seq1

239bp

PREDICTED:_eukaryotic_translation_initiation_factor_4_gamma_2-like_[Papilio_xuthus]

FPKM:6.99 TPM:6.47

5055

A_BomaMG_comp149196_c0_seq1

761bp

FPKM:2.51 TPM:2.33

5056

A_BomaMG_comp149200_c0_seq1

596bp

PREDICTED:_LOW_QUALITY_PROTEIN:_A-kinase_anchor_protein_13_[Bombyx_mori]

GO:0000902	P	cell morphogenesis
GO:0002376	P	immune system process
GO:0005085	F	guanyl-nucleotide exchange factor activity
GO:0005089	F	guanyl-nucleotide exchange factor activity
GO:0005737	C	cytoplasm
GO:0005794	C	Golgi apparatus
GO:0005819	C	spindle
GO:0005856	C	cytoskeleton
GO:0005874	C	microtubule
GO:0005923	C	bicellular tight junction
GO:0007015	P	actin filament organization
GO:0007026	P	negative regulation of microtubule depolymerization
GO:0007049	P	cell cycle
GO:0007067	P	mitotic cell cycle
GO:0008017	F	microtubule binding
GO:0016023	C	cytoplasmic vesicle
GO:0017048	F	small GTPase binding
GO:0030054	C	cell junction
GO:0030676	F	guanyl-nucleotide exchange factor activity
GO:0031410	C	cytoplasmic vesicle
GO:0031982	C	vesicle
GO:0032587	C	ruffle membrane
GO:0032755	P	positive regulation of interleukin-6 production
GO:0032760	P	positive regulation of tumor necrosis factor production
GO:0035023	P	regulation of Rho protein signal transduction
GO:0035556	P	intracellular signal transduction
GO:0043234	C	protein-containing complex
GO:0043547	P	positive regulation of GTPase activity
GO:0045087	P	innate immune response
GO:0045944	P	positive regulation of transcription by RNA polymerase II
GO:0046872	F	metal ion binding
GO:0048365	F	small GTPase binding
GO:0050731	P	positive regulation of peptidyl-tyrosine phosphorylation
GO:0051092	P	positive regulation of NF-kappaB transcription factor activity
GO:0051301	P	cell division
GO:0071225	P	cellular response to muramyl dipeptide

FPKM:1.96 TPM:1.82

5057

A_BomaMG_comp149208_c0_seq1

366bp

FPKM:1.10 TPM:1.02

5058

A_BomaMG_comp14920_c0_seq1

251bp

putative_LOV_domain-containing_protein_[Oenothera_grandis]

FPKM:1.84 TPM:1.70

5059

A_BomaMG_comp14920_c1_seq1

319bp

FPKM:1.23 TPM:1.13

5060

A_BomaMG_comp149217_c0_seq1

622bp

FPKM:1.92 TPM:1.78

5061

A_BomaMG_comp14921_c0_seq1

274bp

PREDICTED:_probable_elongator_complex_protein_2_[Bombyx_mori]

GO:0000502	C	proteasome complex
GO:0005634	C	nucleus
GO:0005737	C	cytoplasm
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006368	P	transcription elongation from RNA polymerase II promoter
GO:0010950	P	positive regulation of endopeptidase activity
GO:0043248	P	proteasome assembly
GO:0061133	F	endopeptidase activator activity