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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
4021 A_BomaMG_comp14050_c0_seq1
1205bp
PREDICTED:_double-stranded_RNA-specific_editase_1_isoform_X2_[Bombyx_mori]
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0003726 F double-stranded RNA adenosine deaminase activity
GO:0004000 F adenosine deaminase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006382 P adenosine to inosine editing
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0007420 P brain development
GO:0008285 P negative regulation of cell population proliferation
GO:0016553 P base conversion or substitution editing
GO:0016556 P mRNA modification
GO:0016787 F hydrolase activity
GO:0030336 P negative regulation of cell migration
GO:0042803 F protein homodimerization activity
GO:0044387 P negative regulation of protein kinase activity by regulation of protein phosphorylation
GO:0045070 P positive regulation of viral genome replication
GO:0046872 F metal ion binding
GO:0050685 P positive regulation of mRNA processing
GO:0051726 P regulation of cell cycle
FPKM:1.36 TPM:1.26
4022 A_BomaMG_comp14051_c0_seq1
1017bp
endonuclease-reverse_transcriptase_[Bombyx_mori]
FPKM:1.26 TPM:1.16
4023 A_BomaMG_comp14053_c0_seq1
229bp
PREDICTED:_uncharacterized_protein_LOC101742795_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0042162 F telomeric DNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0051721 F protein phosphatase 2A binding
FPKM:4.99 TPM:4.62
4024 A_BomaMG_comp14053_c1_seq1
308bp
PREDICTED:_uncharacterized_protein_LOC101742795_[Bombyx_mori]
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0008150 P biological_process
GO:0042162 F telomeric DNA binding
GO:0045111 C intermediate filament cytoskeleton
GO:0051721 F protein phosphatase 2A binding
FPKM:3.19 TPM:2.95
4025 A_BomaMG_comp14054_c0_seq1
267bp
FPKM:1.15 TPM:1.06
4026 A_BomaMG_comp14056_c0_seq1
307bp
FPKM:2.14 TPM:1.98
4027 A_BomaMG_comp14056_c1_seq1
294bp
PREDICTED:_integrin_alpha-6_isoform_X2_[Stegastes_partitus]
FPKM:1.19 TPM:1.10
4028 A_BomaMG_comp14058_c0_seq1
504bp
FPKM:1.37 TPM:1.27
4029 A_BomaMG_comp1405_c0_seq1
247bp
PREDICTED:_monocarboxylate_transporter_9-like_isoform_X2_[Papilio_polytes]
FPKM:1.45 TPM:1.34
4030 A_BomaMG_comp140601_c0_seq1
870bp
FPKM:1.57 TPM:1.46
4031 A_BomaMG_comp140609_c0_seq1
468bp
PREDICTED:_LOW_QUALITY_PROTEIN:_probable_phospholipid-transporting_ATPase_VD_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
FPKM:3.31 TPM:3.07
4032 A_BomaMG_comp14060_c0_seq1
703bp
PREDICTED:_CMP-sialic_acid_transporter_1_[Papilio_xuthus]
GO:0000139 C Golgi membrane
GO:0005351 F carbohydrate:proton symporter activity
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.17 TPM:1.08
4033 A_BomaMG_comp14060_c1_seq1
454bp
PREDICTED:_CMP-sialic_acid_transporter_1_isoform_X2_[Amyelois_transitella]
GO:0000139 C Golgi membrane
GO:0005351 F carbohydrate:proton symporter activity
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015992 P proton transmembrane transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.62 TPM:1.50
4034 A_BomaMG_comp14061_c0_seq1
341bp
MULTISPECIES:_hypothetical_protein_[Dehalobacter]
FPKM:1.27 TPM:1.18
4035 A_BomaMG_comp140628_c0_seq1
339bp
FPKM:3.22 TPM:2.98
4036 A_BomaMG_comp14064_c0_seq1
246bp
FPKM:0.00 TPM:0.00
4037 A_BomaMG_comp14064_c0_seq2
642bp
PREDICTED:_rho_GTPase-activating_protein_190_isoform_X2_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005525 F GTP binding
GO:0005575 C cellular_component
GO:0005622 C intracellular anatomical structure
GO:0007165 P signal transduction
GO:0007264 P small GTPase mediated signal transduction
GO:0007266 P Rho protein signal transduction
GO:0007275 P multicellular organism development
GO:0007415 P defasciculation of motor neuron axon
GO:0016319 P mushroom body development
GO:0030215 F semaphorin receptor binding
GO:0043547 P positive regulation of GTPase activity
GO:0045792 P negative regulation of cell size
GO:0050770 P regulation of axonogenesis
FPKM:1.40 TPM:1.29
4038 A_BomaMG_comp140651_c0_seq1
819bp
PREDICTED:_R3H_domain-containing_protein_2_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0044822 F RNA binding
FPKM:2.18 TPM:2.02
4039 A_BomaMG_comp14066_c0_seq1
949bp
PREDICTED:_cleavage_stimulation_factor_subunit_1_[Papilio_xuthus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0044822 F RNA binding
FPKM:2.34 TPM:2.16
4040 A_BomaMG_comp14067_c0_seq1
812bp
PREDICTED:_uncharacterized_protein_LOC101746464_[Bombyx_mori]
FPKM:1.93 TPM:1.79
4041 A_BomaMG_comp14067_c1_seq1
764bp
PREDICTED:_uncharacterized_protein_LOC101746464_[Bombyx_mori]
GO:0006810 P transport
GO:0015031 P protein transport
FPKM:1.69 TPM:1.56
4042 A_BomaMG_comp140681_c0_seq1
402bp
PREDICTED:_uncharacterized_protein_LOC105841809_[Bombyx_mori]
FPKM:2.46 TPM:2.28
4043 A_BomaMG_comp14068_c0_seq1
522bp
FPKM:1.99 TPM:1.84
4044 A_BomaMG_comp140696_c0_seq1
423bp
FPKM:3.23 TPM:2.99
4045 A_BomaMG_comp14069_c0_seq1
278bp
hypothetical_protein_VOLCADRAFT_95918_[Volvox_carteri_f._nagariensis]
FPKM:1.37 TPM:1.27
4046 A_BomaMG_comp1406_c0_seq1
302bp
PREDICTED:_synaptic_vesicle_2-related_protein-like,_partial_[Amyelois_transitella]
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:0.83 TPM:0.77
4047 A_BomaMG_comp14070_c0_seq1
367bp
FPKM:1.64 TPM:1.52
4048 A_BomaMG_comp14071_c0_seq1
876bp
FPKM:1.56 TPM:1.44
4049 A_BomaMG_comp14073_c0_seq1
289bp
PREDICTED:_zinc_finger_protein_57-like_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001525 P angiogenesis
GO:0001755 P neural crest cell migration
GO:0001842 P neural fold formation
GO:0001947 P heart looping
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007507 P heart development
GO:0008285 P negative regulation of cell population proliferation
GO:0008544 P epidermis development
GO:0009913 P epidermal cell differentiation
GO:0009953 P dorsal/ventral pattern formation
GO:0010719 P negative regulation of epithelial to mesenchymal transition
GO:0010837 P regulation of keratinocyte proliferation
GO:0010944 P negative regulation of transcription by competitive promoter binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045617 P negative regulation of keratinocyte differentiation
GO:0045618 P positive regulation of keratinocyte differentiation
GO:0045746 P negative regulation of Notch signaling pathway
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0048557 P embryonic digestive tract morphogenesis
GO:0051726 P regulation of cell cycle
GO:0060214 P endocardium formation
GO:0060347 P heart trabecula formation
GO:0060716 P labyrinthine layer blood vessel development
GO:2000647 P negative regulation of stem cell proliferation
FPKM:2.79 TPM:2.58
4050 A_BomaMG_comp14073_c1_seq1
572bp
PREDICTED:_zinc_finger_protein_57-like_isoform_X1_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:1.04 TPM:0.96
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