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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3961 A_BomaMG_comp14003_c0_seq1
342bp
hypothetical_protein_M569_02514,_partial_[Genlisea_aurea]
FPKM:10.95 TPM:10.14
3962 A_BomaMG_comp140046_c0_seq1
392bp
FPKM:2.09 TPM:1.94
3963 A_BomaMG_comp140057_c0_seq1
540bp
PREDICTED:_uncharacterized_protein_LOC101741984_[Bombyx_mori]
FPKM:3.21 TPM:2.98
3964 A_BomaMG_comp14005_c0_seq1
336bp
FPKM:1.09 TPM:1.01
3965 A_BomaMG_comp140061_c0_seq1
833bp
PREDICTED:_facilitated_trehalose_transporter_Tret1-like_[Bombyx_mori]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015767 P lactose transport
GO:0015768 P maltose transport
GO:0015770 P sucrose transport
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:1.92 TPM:1.78
3966 A_BomaMG_comp140075_c0_seq1
381bp
FPKM:3.40 TPM:3.15
3967 A_BomaMG_comp14008_c0_seq1
302bp
uncharacterized_protein_LOC101741444_[Bombyx_mori]
FPKM:1.67 TPM:1.55
3968 A_BomaMG_comp14008_c0_seq2
345bp
uncharacterized_protein_LOC101741444_[Bombyx_mori]
FPKM:1.45 TPM:1.34
3969 A_BomaMG_comp140115_c0_seq1
370bp
PREDICTED:_cytoplasmic_protein_NCK1_[Amyelois_transitella]
GO:0000164 C protein phosphatase type 1 complex
GO:0004860 F protein kinase inhibitor activity
GO:0005086 F guanyl-nucleotide exchange factor activity
GO:0005102 F signaling receptor binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005802 C trans-Golgi network
GO:0005840 C ribosome
GO:0005886 C plasma membrane
GO:0005911 C cell-cell junction
GO:0006417 P regulation of translation
GO:0006469 P negative regulation of protein kinase activity
GO:0006930 P substrate-dependent cell migration, cell extension
GO:0007015 P actin filament organization
GO:0010976 P positive regulation of neuron projection development
GO:0012506 C vesicle membrane
GO:0016192 P vesicle-mediated transport
GO:0016477 P cell migration
GO:0019904 F protein domain specific binding
GO:0030032 P lamellipodium assembly
GO:0030334 P regulation of cell migration
GO:0030838 P positive regulation of actin filament polymerization
GO:0030971 F receptor tyrosine kinase binding
GO:0033137 P negative regulation of peptidyl-serine phosphorylation
GO:0036493 P positive regulation of translation in response to endoplasmic reticulum stress
GO:0042102 P positive regulation of T cell proliferation
GO:0042110 P T cell activation
GO:0043547 P positive regulation of GTPase activity
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046875 F ephrin receptor binding
GO:0048013 P ephrin receptor signaling pathway
GO:0051707 P response to other organism
GO:0060548 P negative regulation of cell death
GO:0070262 P peptidyl-serine dephosphorylation
GO:0071074 F eukaryotic initiation factor eIF2 binding
GO:1902237 P positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:1903676 P positive regulation of cap-dependent translational initiation
GO:1903679 P positive regulation of cap-independent translational initiation
GO:1903898 P negative regulation of PERK-mediated unfolded protein response
GO:1903912 P negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation
GO:1904030 P negative regulation of cyclin-dependent protein kinase activity
GO:1990441 P negative regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress
FPKM:2.70 TPM:2.50
3970 A_BomaMG_comp14011_c0_seq1
563bp
PREDICTED:_putative_ATP-dependent_RNA_helicase_DHX33_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000182 F rDNA binding
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0008026 F helicase activity
GO:0016787 F hydrolase activity
GO:0033613 F DNA-binding transcription factor binding
GO:0044822 F RNA binding
GO:0045943 P positive regulation of transcription by RNA polymerase I
FPKM:1.95 TPM:1.81
3971 A_BomaMG_comp140134_c0_seq1
776bp
FPKM:1.54 TPM:1.42
3972 A_BomaMG_comp14015_c0_seq1
400bp
FPKM:1.86 TPM:1.72
3973 A_BomaMG_comp140167_c0_seq1
733bp
FPKM:2.33 TPM:2.16
3974 A_BomaMG_comp14016_c0_seq1
247bp
hypothetical_protein_MSMAC_2158_[Methanosarcina_mazei_C16]
FPKM:0.97 TPM:0.90
3975 A_BomaMG_comp14017_c0_seq1
246bp
PREDICTED:_probable_tRNA_(uracil-O(2)-)-methyltransferase,_partial_[Bombyx_mori]
FPKM:2.45 TPM:2.27
3976 A_BomaMG_comp14019_c0_seq1
789bp
PREDICTED:_protein_unc-119_homolog_[Papilio_polytes]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0006810 P transport
GO:0007399 P nervous system development
GO:0008289 F lipid binding
GO:0015031 P protein transport
FPKM:1.28 TPM:1.19
3977 A_BomaMG_comp1401_c0_seq1
270bp
FPKM:1.25 TPM:1.16
3978 A_BomaMG_comp1401_c0_seq2
227bp
FPKM:1.05 TPM:0.97
3979 A_BomaMG_comp14021_c0_seq1
795bp
hypothetical_protein_RR48_06180_[Papilio_machaon]
FPKM:12.53 TPM:11.60
3980 A_BomaMG_comp140223_c0_seq1
820bp
PREDICTED:_serine/threonine-protein_kinase_greatwall_[Bombyx_mori]
GO:0000086 P G2/M transition of mitotic cell cycle
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0007067 P mitotic cell cycle
GO:0007147 P female meiosis II
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0032154 C cleavage furrow
GO:0034048 P negative regulation of phosphoprotein phosphatase activity
GO:0035556 P intracellular signal transduction
GO:0051301 P cell division
GO:0051487 P obsolete positive regulation of ubiquitin-protein ligase activity involved in meiotic cell cycle
GO:0051721 F protein phosphatase 2A binding
GO:0051726 P regulation of cell cycle
FPKM:1.59 TPM:1.47
3981 A_BomaMG_comp14023_c0_seq1
519bp
FPKM:1.81 TPM:1.67
3982 A_BomaMG_comp14024_c0_seq1
257bp
FPKM:1.28 TPM:1.19
3983 A_BomaMG_comp140262_c0_seq1
1252bp
PREDICTED:_probable_multidrug_resistance-associated_protein_lethal(2)03659_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:1.58 TPM:1.46
3984 A_BomaMG_comp140266_c0_seq1
1548bp
FPKM:1.78 TPM:1.65
3985 A_BomaMG_comp14026_c0_seq1
320bp
FPKM:0.49 TPM:0.45
3986 A_BomaMG_comp140298_c0_seq1
414bp
FPKM:1.17 TPM:1.08
3987 A_BomaMG_comp140299_c0_seq1
596bp
FPKM:1.96 TPM:1.82
3988 A_BomaMG_comp14030_c0_seq1
1033bp
FPKM:1.63 TPM:1.51
3989 A_BomaMG_comp14030_c1_seq1
484bp
FPKM:1.68 TPM:1.56
3990 A_BomaMG_comp140313_c0_seq1
592bp
PREDICTED:_neuroblastoma-amplified_sequence-like_[Bombyx_mori]
GO:0000149 F SNARE binding
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0070939 C Dsl1/NZR complex
GO:2000623 P negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
FPKM:2.81 TPM:2.60
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