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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

2341

A_BomaMG_comp12499_c0_seq1

787bp

eukaryotic_translation_initiation_factor_3_subunit_K_[Bombyx_mori]

GO:0001731	P	formation of translation preinitiation complex
GO:0003723	F	RNA binding
GO:0003743	F	translation initiation factor activity
GO:0005737	C	cytoplasm
GO:0005852	C	eukaryotic translation initiation factor 3 complex
GO:0006412	P	translation
GO:0006413	P	translational initiation
GO:0006446	P	regulation of translational initiation
GO:0016282	C	eukaryotic 43S preinitiation complex
GO:0033290	C	eukaryotic 48S preinitiation complex
GO:0043022	F	ribosome binding

FPKM:52.68 TPM:48.78

2342

A_BomaMG_comp1249_c0_seq1

370bp

transcriptional_regulator_[Vibrio_sp._JCM_19241]

FPKM:1.08 TPM:1.00

2343

A_BomaMG_comp12500_c0_seq1

2505bp

FPKM:0.00 TPM:0.00

2344

A_BomaMG_comp12500_c0_seq2

2574bp

FPKM:27.91 TPM:25.84

2345

A_BomaMG_comp125011_c0_seq1

458bp

BCP_inhibitor_[Operophtera_brumata]

GO:0006508	P	proteolysis
GO:0008233	F	peptidase activity
GO:0008234	F	cysteine-type peptidase activity
GO:0016787	F	hydrolase activity

FPKM:4.29 TPM:3.97

2346

A_BomaMG_comp12501_c0_seq1

693bp

FPKM:51.02 TPM:47.24

2347

A_BomaMG_comp12501_c0_seq2

422bp

FPKM:25.96 TPM:24.04

2348

A_BomaMG_comp12503_c0_seq1

1513bp

isocitrate_dehydrogenase_[Bombyx_mori]

GO:0000287	F	magnesium ion binding
GO:0004450	F	isocitrate dehydrogenase (NADP+) activity
GO:0005737	C	cytoplasm
GO:0006097	P	glyoxylate cycle
GO:0006099	P	tricarboxylic acid cycle
GO:0006102	P	isocitrate metabolic process
GO:0006103	P	2-oxoglutarate metabolic process
GO:0016491	F	oxidoreductase activity
GO:0016616	F	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046872	F	metal ion binding
GO:0051287	F	NAD binding
GO:0055114	P	obsolete oxidation-reduction process

FPKM:230.29 TPM:213.24

2349

A_BomaMG_comp12503_c0_seq2

1639bp

isocitrate_dehydrogenase_[Bombyx_mori]

GO:0000287	F	magnesium ion binding
GO:0004450	F	isocitrate dehydrogenase (NADP+) activity
GO:0005737	C	cytoplasm
GO:0006097	P	glyoxylate cycle
GO:0006099	P	tricarboxylic acid cycle
GO:0006102	P	isocitrate metabolic process
GO:0006103	P	2-oxoglutarate metabolic process
GO:0016491	F	oxidoreductase activity
GO:0016616	F	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0046872	F	metal ion binding
GO:0051287	F	NAD binding
GO:0055114	P	obsolete oxidation-reduction process

FPKM:137.46 TPM:127.29

2350

A_BomaMG_comp125040_c0_seq1

568bp

PREDICTED:_uncharacterized_protein_LOC101738114_isoform_X2_[Bombyx_mori]

FPKM:1.84 TPM:1.70

2351

A_BomaMG_comp125047_c0_seq1

769bp

PREDICTED:_protein_N-lysine_methyltransferase_METTL20-like_isoform_X3_[Bombyx_mori]

GO:0008168	F	methyltransferase activity
GO:0016740	F	transferase activity
GO:0032259	P	methylation

FPKM:2.59 TPM:2.40

2352

A_BomaMG_comp12505_c0_seq1

1219bp

Charged_multivesicular_body_protein_6-A_[Operophtera_brumata]

GO:0005768	C	endosome
GO:0006810	P	transport
GO:0007034	P	vacuolar transport
GO:0012505	C	endomembrane system
GO:0015031	P	protein transport
GO:0016020	C	membrane
GO:0031902	C	late endosome membrane

FPKM:40.14 TPM:37.17

2353

A_BomaMG_comp12506_c0_seq1

1714bp

PREDICTED:_transmembrane_protein_135-like_[Amyelois_transitella]

GO:0005777	C	peroxisome
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane

FPKM:5.43 TPM:5.03

2354

A_BomaMG_comp125071_c0_seq1

821bp

circadian_clock-controlled_protein-like_precursor_[Papilio_xuthus]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0007623	P	circadian rhythm
GO:0048511	P	rhythmic process

FPKM:3.07 TPM:2.84

2355

A_BomaMG_comp125075_c0_seq1

492bp

PREDICTED:_silk_gland_factor_1_[Amyelois_transitella]

GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0008134	F	transcription factor binding
GO:0019904	F	protein domain specific binding
GO:0043565	F	sequence-specific DNA binding

FPKM:3.38 TPM:3.13

2356

A_BomaMG_comp12507_c0_seq1

786bp

PREDICTED:_protein_TsetseEP-like_[Bombyx_mori]

FPKM:56.52 TPM:52.34

2357

A_BomaMG_comp12508_c0_seq1

3079bp

eukaryotic_initiation_factor_4B_protein_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0001731	P	formation of translation preinitiation complex
GO:0002181	P	cytoplasmic translation
GO:0003676	F	nucleic acid binding
GO:0003723	F	RNA binding
GO:0003743	F	translation initiation factor activity
GO:0005844	C	polysome
GO:0006412	P	translation
GO:0006413	P	translational initiation
GO:0016281	C	eukaryotic translation initiation factor 4F complex
GO:0033592	F	RNA strand annealing activity
GO:0034057	F	RNA strand-exchange activity
GO:0043024	F	ribosomal small subunit binding
GO:0044822	F	RNA binding
GO:0097010	P	eukaryotic translation initiation factor 4F complex assembly

FPKM:24.80 TPM:22.97

2358

A_BomaMG_comp125095_c0_seq1

495bp

PREDICTED:_serine/arginine_repetitive_matrix_protein_1-like_[Bombyx_mori]

FPKM:3.35 TPM:3.10

2359

A_BomaMG_comp12509_c0_seq1

2945bp

PREDICTED:_probable_methylcrotonoyl-CoA_carboxylase_beta_chain,_mitochondrial_[Amyelois_transitella]

GO:0000166	F	nucleotide binding
GO:0004485	F	methylcrotonoyl-CoA carboxylase activity
GO:0005524	F	ATP binding
GO:0005575	C	cellular_component
GO:0005739	C	mitochondrion
GO:0005759	C	mitochondrial matrix
GO:0006551	P	leucine metabolic process
GO:0006552	P	leucine catabolic process
GO:0007563	P	regulation of eclosion
GO:0016421	F	CoA carboxylase activity
GO:0016874	F	ligase activity

FPKM:30.06 TPM:27.83

2360

A_BomaMG_comp1250_c0_seq1

372bp

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

GO:0003964	F	RNA-directed DNA polymerase activity
GO:0006278	P	RNA-dependent DNA biosynthetic process
GO:0008152	P	metabolic process
GO:0016740	F	transferase activity
GO:0016779	F	nucleotidyltransferase activity

FPKM:1.42 TPM:1.32

2361

A_BomaMG_comp125107_c0_seq1

821bp

smoothened_[Danaus_plexippus]

GO:0001746	P	Bolwig's organ morphogenesis
GO:0002385	P	mucosal immune response
GO:0004871	F	obsolete signal transducer activity
GO:0004888	F	transmembrane signaling receptor activity
GO:0004930	F	G protein-coupled receptor activity
GO:0005113	F	patched binding
GO:0005515	F	protein binding
GO:0005768	C	endosome
GO:0005886	C	plasma membrane
GO:0005887	C	integral component of plasma membrane
GO:0005929	C	cilium
GO:0007165	P	signal transduction
GO:0007166	P	cell surface receptor signaling pathway
GO:0007186	P	G protein-coupled receptor signaling pathway
GO:0007193	P	adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway
GO:0007224	P	smoothened signaling pathway
GO:0007275	P	multicellular organism development
GO:0007346	P	regulation of mitotic cell cycle
GO:0007350	P	blastoderm segmentation
GO:0007455	P	eye-antennal disc morphogenesis
GO:0016020	C	membrane
GO:0016021	C	integral component of membrane
GO:0017147	F	Wnt-protein binding
GO:0030424	C	axon
GO:0030425	C	dendrite
GO:0030707	P	ovarian follicle cell development
GO:0035019	P	somatic stem cell population maintenance
GO:0035567	P	non-canonical Wnt signaling pathway
GO:0042813	F	Wnt-activated receptor activity
GO:0042981	P	regulation of apoptotic process
GO:0043025	C	neuronal cell body
GO:0045746	P	negative regulation of Notch signaling pathway
GO:0048099	P	anterior/posterior lineage restriction, imaginal disc
GO:0048100	P	wing disc anterior/posterior pattern formation
GO:0048592	P	eye morphogenesis
GO:0060070	P	canonical Wnt signaling pathway
GO:0090004	P	positive regulation of protein localization to plasma membrane
GO:2000134	P	negative regulation of G1/S transition of mitotic cell cycle

FPKM:2.65 TPM:2.45

2362

A_BomaMG_comp12510_c0_seq1

2039bp

PREDICTED:_retinal_dehydrogenase_1-like_[Amyelois_transitella]

GO:0001758	F	retinal dehydrogenase activity
GO:0005737	C	cytoplasm
GO:0008152	P	metabolic process
GO:0016491	F	oxidoreductase activity
GO:0016620	F	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0042572	P	retinol metabolic process
GO:0055114	P	obsolete oxidation-reduction process