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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1171 A_BomaMG_comp11485_c0_seq1
652bp
hypothetical_protein_KGM_18281_[Danaus_plexippus]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:3.96 TPM:3.67
1172 A_BomaMG_comp11485_c1_seq1
686bp
FPKM:2.55 TPM:2.36
1173 A_BomaMG_comp114878_c0_seq1
355bp
FPKM:1.95 TPM:1.81
1174 A_BomaMG_comp11487_c0_seq1
1271bp
FPKM:2.51 TPM:2.33
1175 A_BomaMG_comp11488_c0_seq1
596bp
putative_TFIIH_basal_transcription_factor_complex_p52_subunit_[Danaus_plexippus]
GO:0000439 C transcription factor TFIIH core complex
GO:0003690 F double-stranded DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0004003 F DNA helicase activity
GO:0004672 F protein kinase activity
GO:0005634 C nucleus
GO:0005675 C transcription factor TFIIH holo complex
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0008094 F ATP-dependent activity, acting on DNA
GO:0008353 F RNA polymerase II CTD heptapeptide repeat kinase activity
GO:0032508 P DNA duplex unwinding
GO:0070816 P phosphorylation of RNA polymerase II C-terminal domain
FPKM:2.78 TPM:2.57
1176 A_BomaMG_comp114918_c0_seq1
268bp
two-component_sensor_histidine_kinase_[Cohnella_panacarvi]
FPKM:7.20 TPM:6.67
1177 A_BomaMG_comp11491_c0_seq1
244bp
ATP-dependent_RNA_helicase_DDX54-like_protein_[Bombyx_mori]
FPKM:4.02 TPM:3.72
1178 A_BomaMG_comp11491_c0_seq2
202bp
ATP-dependent_RNA_helicase_DDX54-like_protein_[Bombyx_mori]
FPKM:3.10 TPM:2.87
1179 A_BomaMG_comp11492_c0_seq1
893bp
FPKM:2.09 TPM:1.94
1180 A_BomaMG_comp114930_c0_seq1
708bp
PREDICTED:_uncharacterized_protein_LOC101741471_isoform_X2_[Bombyx_mori]
GO:0001503 P ossification
GO:0002080 C acrosomal membrane
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005637 C nuclear inner membrane
GO:0005639 C integral component of nuclear inner membrane
GO:0005737 C cytoplasm
GO:0006998 P nuclear envelope organization
GO:0007129 P homologous chromosome pairing at meiosis
GO:0009612 P response to mechanical stimulus
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0043231 C intracellular membrane-bounded organelle
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
FPKM:2.64 TPM:2.44
1181 A_BomaMG_comp114936_c0_seq1
2105bp
PREDICTED:_structure-specific_endonuclease_subunit_SLX4_[Amyelois_transitella]
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007131 P reciprocal meiotic recombination
GO:0008283 P cell population proliferation
GO:0017108 F 5'-flap endonuclease activity
GO:0033557 C Slx1-Slx4 complex
GO:0035825 P homologous recombination
GO:0043234 C protein-containing complex
GO:0045132 P meiotic chromosome segregation
FPKM:2.41 TPM:2.23
1182 A_BomaMG_comp114938_c0_seq1
500bp
PREDICTED:_LOW_QUALITY_PROTEIN:_translational_activator_GCN1_[Bombyx_mori]
FPKM:4.36 TPM:4.04
1183 A_BomaMG_comp11493_c0_seq1
533bp
ABCC10_protein,_partial_[Spodoptera_litura]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0006810 P transport
GO:0006855 P xenobiotic transmembrane transport
GO:0008152 P metabolic process
GO:0008559 F ABC-type xenobiotic transporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042908 P xenobiotic transport
GO:0055085 P transmembrane transport
FPKM:2.60 TPM:2.41
1184 A_BomaMG_comp11494_c0_seq1
423bp
FPKM:2.25 TPM:2.08
1185 A_BomaMG_comp11495_c0_seq1
1172bp
PREDICTED:_zinc_finger_matrin-type_protein_5_[Plutella_xylostella]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0046872 F metal ion binding
FPKM:2.46 TPM:2.28
1186 A_BomaMG_comp11496_c0_seq1
804bp
PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_10_[Bombyx_mori]
GO:0002039 F p53 binding
GO:0004197 F cysteine-type endopeptidase activity
GO:0004843 F thiol-dependent deubiquitinase
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005769 C early endosome
GO:0006281 P DNA repair
GO:0006508 P proteolysis
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006914 P autophagy
GO:0006974 P cellular response to DNA damage stimulus
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0010506 P regulation of autophagy
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0030330 P DNA damage response, signal transduction by p53 class mediator
GO:0036459 F thiol-dependent deubiquitinase
GO:0044325 F transmembrane transporter binding
FPKM:1.74 TPM:1.61
1187 A_BomaMG_comp11496_c1_seq1
1290bp
Ubiquitin_carboxyl-terminal_hydrolase_10_[Operophtera_brumata]
FPKM:2.41 TPM:2.23
1188 A_BomaMG_comp11497_c0_seq1
619bp
FPKM:2.01 TPM:1.86
1189 A_BomaMG_comp11498_c0_seq1
248bp
FPKM:2.86 TPM:2.65
1190 A_BomaMG_comp11499_c0_seq1
1818bp
PREDICTED:_uncharacterized_protein_LOC101735738_isoform_X2_[Bombyx_mori]
FPKM:2.05 TPM:1.89
1191 A_BomaMG_comp115008_c0_seq1
858bp
PREDICTED:_LOW_QUALITY_PROTEIN:_A-kinase_anchor_protein_13_[Bombyx_mori]
FPKM:2.70 TPM:2.50
1192 A_BomaMG_comp11500_c0_seq1
2506bp
PREDICTED:_R3H_domain-containing_protein_2_isoform_X1_[Bombyx_mori]
FPKM:1.69 TPM:1.56
1193 A_BomaMG_comp115029_c0_seq1
400bp
hypothetical_protein_RR46_15293_[Papilio_xuthus]
FPKM:5.59 TPM:5.17
1194 A_BomaMG_comp11502_c0_seq1
397bp
FPKM:1.10 TPM:1.02
1195 A_BomaMG_comp115034_c0_seq1
713bp
FPKM:2.80 TPM:2.60
1196 A_BomaMG_comp11504_c0_seq1
1033bp
PREDICTED:_myb-like_protein_X_isoform_X2_[Bombyx_mori]
FPKM:1.75 TPM:1.62
1197 A_BomaMG_comp115052_c0_seq1
1020bp
PREDICTED:_histone-lysine_N-methyltransferase_2D-like_isoform_X3_[Bombyx_mori]
GO:0000812 C Swr1 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016568 P chromatin organization
GO:0035267 C NuA4 histone acetyltransferase complex
GO:0040008 P regulation of growth
GO:0043967 P histone H4 acetylation
GO:0043968 P histone H2A acetylation
FPKM:2.75 TPM:2.55
1198 A_BomaMG_comp11505_c0_seq1
501bp
hypothetical_protein_AUO94_07045_[Planococcus_kocurii]
FPKM:2.23 TPM:2.06
1199 A_BomaMG_comp11506_c0_seq1
286bp
FPKM:4.14 TPM:3.83
1200 A_BomaMG_comp11510_c0_seq1
342bp
FPKM:3.37 TPM:3.12
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