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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
751 A_SariMSG_c10993_g1_i2
216bp
FPKM:619.58 TPM:395.44
752 A_SariMSG_c10995_g1_i1
261bp
FPKM:4.45 TPM:2.84
753 A_SariMSG_c10996_g1_i1
588bp
LOW_QUALITY_PROTEIN:_DNA_topoisomerase_2-binding_protein_1_[Helicoverpa_armigera]
GO:0000076 P DNA replication checkpoint signaling
GO:0000785 C chromatin
GO:0000922 C spindle pole
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005656 C nuclear pre-replicative complex
GO:0005694 C chromosome
GO:0005737 C cytoplasm
GO:0005815 C microtubule organizing center
GO:0005856 C cytoskeleton
GO:0006260 P DNA replication
GO:0006267 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
GO:0006270 P DNA replication initiation
GO:0006271 P DNA strand elongation involved in DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0019900 F kinase binding
GO:0030174 P regulation of DNA-dependent DNA replication initiation
GO:0033138 P positive regulation of peptidyl-serine phosphorylation
GO:0035563 P positive regulation of chromatin binding
GO:0045860 P positive regulation of protein kinase activity
GO:0071163 P DNA replication preinitiation complex assembly
GO:0071165 P GINS complex assembly
GO:0071168 P protein localization to chromatin
FPKM:2.69 TPM:1.72
754 A_SariMSG_c10997_g1_i1
204bp
guanylate_cyclase_32E_[Helicoverpa_armigera]
FPKM:0.00 TPM:0.00
755 A_SariMSG_c10998_g1_i1
298bp
FPKM:2.09 TPM:1.33
756 A_SariMSG_c10999_g1_i1
210bp
FPKM:6.92 TPM:4.42
757 A_SariMSG_c109_g1_i1
586bp
FPKM:2.27 TPM:1.45
758 A_SariMSG_c11001_g1_i1
418bp
PREDICTED:_zinc_finger_protein_649-like_[Amyelois_transitella]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
FPKM:2.77 TPM:1.77
759 A_SariMSG_c11002_g1_i1
374bp
FPKM:1.94 TPM:1.24
760 A_SariMSG_c11003_g1_i1
295bp
clathrin_heavy_chain_[Bombyx_mori]
GO:0005198 F structural molecule activity
GO:0005515 F protein binding
GO:0005802 C trans-Golgi network
GO:0005811 C lipid droplet
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005905 C clathrin-coated pit
GO:0005938 C cell cortex
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0007268 P chemical synaptic transmission
GO:0007269 P neurotransmitter secretion
GO:0007291 P sperm individualization
GO:0007594 P puparial adhesion
GO:0008021 C synaptic vesicle
GO:0008103 P oocyte microtubule cytoskeleton polarization
GO:0016020 C membrane
GO:0016079 P synaptic vesicle exocytosis
GO:0016183 P synaptic vesicle coating
GO:0016192 P vesicle-mediated transport
GO:0030125 C clathrin vesicle coat
GO:0030129 C clathrin coat of synaptic vesicle
GO:0030130 C clathrin coat of trans-Golgi network vesicle
GO:0030132 C clathrin coat of coated pit
GO:0030135 C coated vesicle
GO:0030136 C clathrin-coated vesicle
GO:0030141 C secretory granule
GO:0030198 P extracellular matrix organization
GO:0030659 C cytoplasmic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032051 F clathrin light chain binding
GO:0033227 P dsRNA transport
GO:0033363 P secretory granule organization
GO:0035002 P liquid clearance, open tracheal system
GO:0035159 P regulation of tube length, open tracheal system
GO:0040008 P regulation of growth
GO:0045451 P pole plasm oskar mRNA localization
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045807 P positive regulation of endocytosis
GO:0046667 P compound eye retinal cell programmed cell death
GO:0048471 C perinuclear region of cytoplasm
GO:0048749 P compound eye development
GO:0071439 C clathrin complex
FPKM:2.13 TPM:1.36
761 A_SariMSG_c11005_g1_i1
543bp
PREDICTED:_uncharacterized_protein_LOC107268244_[Cephus_cinctus]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:1.58 TPM:1.01
762 A_SariMSG_c11006_g1_i1
220bp
FPKM:3.44 TPM:2.20
763 A_SariMSG_c11007_g1_i1
492bp
FPKM:2.17 TPM:1.39
764 A_SariMSG_c11008_g1_i1
371bp
Putative_RNA_polymerase_II_subunit_B1_CTD_phosphatase_RPAP2_[Papilio_xuthus]
FPKM:4.77 TPM:3.04
765 A_SariMSG_c11009_g1_i1
992bp
PREDICTED:_39S_ribosomal_protein_L28,_mitochondrial_[Amyelois_transitella]
GO:0003735 F structural constituent of ribosome
GO:0005739 C mitochondrion
GO:0005762 C mitochondrial large ribosomal subunit
GO:0005840 C ribosome
GO:0030529 C ribonucleoprotein complex
GO:0032543 P mitochondrial translation
FPKM:18.26 TPM:11.65
766 A_SariMSG_c1100_g1_i1
222bp
hypothetical_protein_RR46_01806_[Papilio_xuthus]
FPKM:1.68 TPM:1.07
767 A_SariMSG_c11010_g1_i1
910bp
hamartin_[Bombyx_mori]
FPKM:2.20 TPM:1.41
768 A_SariMSG_c11012_g1_i1
339bp
FPKM:6.88 TPM:4.39
769 A_SariMSG_c11014_g1_i1
209bp
FPKM:2.01 TPM:1.28
770 A_SariMSG_c11015_g1_i1
510bp
FPKM:3.96 TPM:2.53
771 A_SariMSG_c11016_g1_i1
219bp
FPKM:0.00 TPM:0.00
772 A_SariMSG_c11017_g1_i1
354bp
FPKM:1.82 TPM:1.16
773 A_SariMSG_c11018_g1_i1
379bp
probable_inactive_tRNA-specific_adenosine_deaminase-like_protein_3_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005829 C cytosol
GO:0008033 P tRNA processing
GO:0008270 F zinc ion binding
GO:0009451 P RNA modification
GO:0019239 F deaminase activity
GO:0046872 F metal ion binding
FPKM:2.16 TPM:1.38
774 A_SariMSG_c11019_g1_i1
276bp
PREDICTED:_uncharacterized_protein_LOC106142976_[Amyelois_transitella]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0006470 P protein dephosphorylation
GO:0016787 F hydrolase activity
GO:0035335 P peptidyl-tyrosine dephosphorylation
FPKM:2.45 TPM:1.57
775 A_SariMSG_c1101_g1_i1
240bp
FPKM:1.36 TPM:0.87
776 A_SariMSG_c11020_g1_i1
573bp
FPKM:7.18 TPM:4.58
777 A_SariMSG_c11022_g1_i1
504bp
BLOC-1-related_complex_subunit_5_[Bombyx_mori]
FPKM:3.15 TPM:2.01
778 A_SariMSG_c11023_g1_i1
231bp
FPKM:1.50 TPM:0.96
779 A_SariMSG_c11024_g1_i1
388bp
myotubularin-related_protein_4_isoform_X2_[Helicoverpa_armigera]
FPKM:4.17 TPM:2.66
780 A_SariMSG_c11025_g1_i1
245bp
FPKM:2.59 TPM:1.65
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