SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/50247
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
601 A_SariMSG_c10821_g1_i1
501bp
transcription_initiation_factor_TFIID_subunit_6_[Danaus_plexippus_plexippus]
FPKM:8.65 TPM:5.52
602 A_SariMSG_c10822_g1_i1
359bp
FPKM:2.08 TPM:1.32
603 A_SariMSG_c10823_g1_i1
286bp
FPKM:0.45 TPM:0.29
604 A_SariMSG_c10826_g1_i1
225bp
Uncharacterized_protein_OBRU01_07812_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0003824 F catalytic activity
GO:0005524 F ATP binding
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0006655 P phosphatidylglycerol biosynthetic process
GO:0008444 F CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
GO:0008654 P phospholipid biosynthetic process
GO:0016740 F transferase activity
GO:0016780 F phosphotransferase activity, for other substituted phosphate groups
FPKM:7.27 TPM:4.64
605 A_SariMSG_c10827_g1_i1
268bp
FPKM:5.76 TPM:3.68
606 A_SariMSG_c1082_g1_i1
378bp
serine/arginine-rich_splicing_factor_1A_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
FPKM:86.96 TPM:55.50
607 A_SariMSG_c10830_g1_i1
250bp
FPKM:2.46 TPM:1.57
608 A_SariMSG_c10831_g1_i1
239bp
FPKM:2.75 TPM:1.76
609 A_SariMSG_c10833_g1_i1
240bp
PREDICTED:_probable_tRNA_pseudouridine_synthase_2_[Papilio_polytes]
GO:0001522 P pseudouridine synthesis
GO:0003723 F RNA binding
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0009451 P RNA modification
GO:0009982 F pseudouridine synthase activity
GO:0016853 F isomerase activity
FPKM:5.45 TPM:3.48
610 A_SariMSG_c10834_g1_i1
601bp
PREDICTED:_microtubule-associated_protein_futsch_[Plutella_xylostella]
FPKM:1.92 TPM:1.23
611 A_SariMSG_c10835_g1_i1
439bp
putative_tetratricopeptide_repeat_protein_7B_[Operophtera_brumata]
GO:0003674 F molecular_function
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0016020 C membrane
GO:0046854 P phosphatidylinositol phosphate biosynthetic process
GO:0090002 P protein localization to plasma membrane
FPKM:9.01 TPM:5.75
612 A_SariMSG_c10837_g1_i1
347bp
transposase_[Spodoptera_frugiperda]
GO:0003700 F DNA-binding transcription factor activity
GO:0005044 F scavenger receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006355 P regulation of transcription, DNA-templated
GO:0006898 P receptor-mediated endocytosis
GO:0016020 C membrane
GO:0043565 F sequence-specific DNA binding
FPKM:6.60 TPM:4.22
613 A_SariMSG_c10839_g1_i1
423bp
putative_inorganic_phosphate_cotransporter_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006814 P sodium ion transport
GO:0006820 P anion transport
GO:0015114 F phosphate ion transmembrane transporter activity
GO:0015293 F symporter activity
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0035435 P phosphate ion transmembrane transport
GO:0055085 P transmembrane transport
FPKM:3.18 TPM:2.03
614 A_SariMSG_c1083_g1_i1
912bp
RWD_domain-containing_protein_2A_[Operophtera_brumata]
FPKM:3.42 TPM:2.18
615 A_SariMSG_c10840_g1_i1
377bp
FPKM:5.19 TPM:3.31
616 A_SariMSG_c10841_g1_i1
368bp
LPS-induced_TNF-alpha_factor_[Operophtera_brumata]
FPKM:3.13 TPM:2.00
617 A_SariMSG_c10842_g1_i1
260bp
FPKM:6.73 TPM:4.29
618 A_SariMSG_c10843_g1_i1
516bp
PREDICTED:_glomulin-like_isoform_X1_[Amyelois_transitella]
GO:0001570 P vasculogenesis
GO:0001843 P neural tube closure
GO:0005171 F hepatocyte growth factor receptor binding
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0031397 P negative regulation of protein ubiquitination
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031462 C Cul2-RING ubiquitin ligase complex
GO:0031463 C Cul3-RING ubiquitin ligase complex
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0032434 P regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0040029 P regulation of gene expression, epigenetic
GO:0042130 P negative regulation of T cell proliferation
GO:0042327 P positive regulation of phosphorylation
GO:0042692 P muscle cell differentiation
GO:0045086 P positive regulation of interleukin-2 production
GO:0050715 P positive regulation of cytokine production
GO:0055105 F ubiquitin-protein transferase inhibitor activity
GO:0072359 P circulatory system development
FPKM:2.71 TPM:1.73
619 A_SariMSG_c10845_g1_i1
338bp
FPKM:16.15 TPM:10.31
620 A_SariMSG_c10848_g1_i1
363bp
PREDICTED:_parafibromin-like_[Plutella_xylostella]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000784 C chromosome, telomeric region
GO:0000993 F RNA polymerase II complex binding
GO:0001711 P endodermal cell fate commitment
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006378 P mRNA polyadenylation
GO:0007049 P cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0010390 P histone monoubiquitination
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0019827 P stem cell population maintenance
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0031442 P positive regulation of mRNA 3'-end processing
GO:0031648 P protein destabilization
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 P histone H2B ubiquitination
GO:0045638 P negative regulation of myeloid cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048147 P negative regulation of fibroblast proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0071222 P cellular response to lipopolysaccharide
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
FPKM:23.56 TPM:15.04
621 A_SariMSG_c10849_g1_i1
369bp
FPKM:2.83 TPM:1.81
622 A_SariMSG_c1084_g1_i1
241bp
PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_isoform_X1_[Amyelois_transitella]
FPKM:3.37 TPM:2.15
623 A_SariMSG_c10851_g1_i1
1364bp
protein_LTV1_homolog_isoform_X2_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:3.86 TPM:2.46
624 A_SariMSG_c10851_g1_i2
1672bp
protein_LTV1_homolog_isoform_X2_[Helicoverpa_armigera]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:26.58 TPM:16.97
625 A_SariMSG_c10853_g1_i1
211bp
FPKM:3.90 TPM:2.49
626 A_SariMSG_c10855_g1_i1
1468bp
prefoldin_subunit_2_[Helicoverpa_armigera]
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006457 P protein folding
GO:0016272 C prefoldin complex
GO:0044183 F protein folding chaperone
GO:0051082 F unfolded protein binding
GO:0051495 P positive regulation of cytoskeleton organization
GO:0070062 C extracellular exosome
FPKM:27.93 TPM:17.83
627 A_SariMSG_c10858_g1_i1
466bp
PREDICTED:_uncharacterized_protein_LOC106118051,_partial_[Papilio_xuthus]
FPKM:2.94 TPM:1.88
628 A_SariMSG_c10859_g1_i1
382bp
FPKM:1.87 TPM:1.19
629 A_SariMSG_c1085_g1_i1
348bp
protein_SERAC1_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005783 C endoplasmic reticulum
GO:0006629 P lipid metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:1.56 TPM:1.00
630 A_SariMSG_c10860_g1_i1
239bp
FPKM:11.70 TPM:7.47
previous next from show/50247

- SilkBase 1999-2023 -