SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search Assembled RNA-Seq

previous next from show/50247
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1231 A_SariMSG_c11517_g1_i1
366bp
FPKM:8.32 TPM:5.31
1232 A_SariMSG_c11518_g1_i1
532bp
FPKM:2.12 TPM:1.35
1233 A_SariMSG_c11519_g1_i1
645bp
FPKM:2.63 TPM:1.68
1234 A_SariMSG_c11520_g1_i1
3253bp
protein_TIS11_isoform_X2_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0001570 P vasculogenesis
GO:0003342 P proepicardium development
GO:0003677 F DNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006402 P mRNA catabolic process
GO:0006417 P regulation of translation
GO:0006915 P apoptotic process
GO:0007507 P heart development
GO:0008283 P cell population proliferation
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0021915 P neural tube development
GO:0033077 P T cell differentiation in thymus
GO:0035264 P multicellular organism growth
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0060710 P chorio-allantoic fusion
GO:0060712 P spongiotrophoblast layer development
FPKM:33.69 TPM:21.50
1235 A_SariMSG_c11521_g1_i1
340bp
microtubule-actin_cross-linking_factor_1,_isoforms_1/2/3/5_[Bombyx_mori]
FPKM:3.26 TPM:2.08
1236 A_SariMSG_c11522_g1_i1
230bp
FPKM:5.33 TPM:3.40
1237 A_SariMSG_c11523_g1_i1
284bp
PREDICTED:_FAM206_family_protein_CG9288_[Papilio_polytes]
GO:0005575 C cellular_component
GO:0008150 P biological_process
FPKM:4.62 TPM:2.95
1238 A_SariMSG_c11524_g1_i1
270bp
facilitated_trehalose_transporter_Tret1-2_homolog_[Helicoverpa_armigera]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:2.80 TPM:1.79
1239 A_SariMSG_c11524_g1_i2
445bp
facilitated_trehalose_transporter_Tret1-2_homolog_[Helicoverpa_armigera]
GO:0005215 F transporter activity
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0008643 P carbohydrate transport
GO:0015574 F trehalose transmembrane transporter activity
GO:0015771 P trehalose transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0022857 F transmembrane transporter activity
GO:0022891 F transmembrane transporter activity
GO:0055085 P transmembrane transport
FPKM:1.80 TPM:1.15
1240 A_SariMSG_c11525_g1_i1
798bp
PREDICTED:_NAD-dependent_protein_deacetylase_Sirt6_[Plutella_xylostella]
GO:0004407 F histone deacetylase activity
GO:0005634 C nucleus
GO:0008340 P determination of adult lifespan
GO:0016575 P histone deacetylation
GO:0016787 F hydrolase activity
GO:0031937 P obsolete positive regulation of chromatin silencing
GO:0046872 F metal ion binding
GO:0070403 F NAD+ binding
FPKM:2.49 TPM:1.59
1241 A_SariMSG_c11526_g1_i1
331bp
FPKM:5.13 TPM:3.28
1242 A_SariMSG_c11527_g1_i1
225bp
FPKM:1.62 TPM:1.03
1243 A_SariMSG_c11528_g1_i1
881bp
FPKM:3.39 TPM:2.16
1244 A_SariMSG_c11529_g1_i1
254bp
FPKM:3.55 TPM:2.27
1245 A_SariMSG_c1152_g1_i1
735bp
FPKM:1.70 TPM:1.08
1246 A_SariMSG_c11532_g1_i1
530bp
Vacuolar_protein_sorting_[Operophtera_brumata]
FPKM:2.94 TPM:1.87
1247 A_SariMSG_c11533_g1_i1
360bp
Uncharacterized_protein_OBRU01_12725,_partial_[Operophtera_brumata]
FPKM:2.95 TPM:1.88
1248 A_SariMSG_c11534_g1_i1
750bp
FPKM:1.86 TPM:1.19
1249 A_SariMSG_c11535_g1_i1
385bp
short-chain_specific_acyl-CoA_dehydrogenase_[Agrotis_segetum]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
FPKM:1.64 TPM:1.04
1250 A_SariMSG_c11535_g1_i2
368bp
short-chain_specific_acyl-CoA_dehydrogenase_[Agrotis_segetum]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0004085 F butyryl-CoA dehydrogenase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0046359 P butyrate catabolic process
GO:0050660 F flavin adenine dinucleotide binding
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
FPKM:9.89 TPM:6.31
1251 A_SariMSG_c11536_g1_i1
565bp
FPKM:4.18 TPM:2.67
1252 A_SariMSG_c11537_g1_i1
312bp
FPKM:6.53 TPM:4.17
1253 A_SariMSG_c11537_g1_i2
232bp
FPKM:5.95 TPM:3.80
1254 A_SariMSG_c11539_g1_i1
298bp
prostatic_acid_phosphatase_isoform_X2_[Bombyx_mori]
GO:0003993 F acid phosphatase activity
GO:0005576 C extracellular region
GO:0008152 P metabolic process
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
FPKM:2.09 TPM:1.33
1255 A_SariMSG_c11540_g1_i1
273bp
FPKM:35.14 TPM:22.43
1256 A_SariMSG_c11542_g1_i1
585bp
hypothetical_protein_KGM_209581_[Danaus_plexippus_plexippus]
FPKM:2.71 TPM:1.73
1257 A_SariMSG_c11543_g1_i1
511bp
centromere-associated_protein_E-like_isoform_X2_[Helicoverpa_armigera]
FPKM:2.23 TPM:1.42
1258 A_SariMSG_c11544_g1_i1
260bp
FPKM:2.24 TPM:1.43
1259 A_SariMSG_c11545_g1_i1
1153bp
PREDICTED:_26S_proteasome_non-ATPase_regulatory_subunit_14_[Amyelois_transitella]
GO:0000502 C proteasome complex
GO:0004843 F thiol-dependent deubiquitinase
GO:0005838 C proteasome regulatory particle
GO:0005875 C microtubule associated complex
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0008541 C proteasome regulatory particle, lid subcomplex
GO:0016579 P protein deubiquitination
GO:0016787 F hydrolase activity
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
FPKM:37.70 TPM:24.06
1260 A_SariMSG_c11547_g1_i1
241bp
FPKM:1.35 TPM:0.86
previous next from show/50247

- SilkBase 1999-2023 -