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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
871 A_BomaMSG_c10971_g1_i1
676bp
uncharacterized_protein_LOC101738925_isoform_X2_[Bombyx_mori]
FPKM:1.28 TPM:0.57
872 A_BomaMSG_c10974_g1_i1
234bp
probable_phenylalanine--tRNA_ligase,_mitochondrial_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004812 F aminoacyl-tRNA ligase activity
GO:0004826 F phenylalanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006412 P translation
GO:0006418 P tRNA aminoacylation for protein translation
GO:0006432 P phenylalanyl-tRNA aminoacylation
GO:0008033 P tRNA processing
GO:0016874 F ligase activity
GO:0043039 P tRNA aminoacylation
FPKM:4.72 TPM:2.11
873 A_BomaMSG_c10975_g1_i1
238bp
tRNA_(guanine-N(7)-)-methyltransferase_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008176 F tRNA (guanine-N7-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0036265 P RNA (guanine-N7)-methylation
FPKM:1.51 TPM:0.67
874 A_BomaMSG_c10975_g2_i1
310bp
tRNA_(guanine-N(7)-)-methyltransferase_[Bombyx_mori]
GO:0000049 F tRNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0006400 P tRNA modification
GO:0008033 P tRNA processing
GO:0008168 F methyltransferase activity
GO:0008176 F tRNA (guanine-N7-)-methyltransferase activity
GO:0016740 F transferase activity
GO:0030488 P tRNA methylation
GO:0032259 P methylation
GO:0036265 P RNA (guanine-N7)-methylation
FPKM:2.52 TPM:1.12
875 A_BomaMSG_c10978_g1_i1
328bp
FPKM:3.40 TPM:1.52
876 A_BomaMSG_c10979_g1_i1
240bp
structural_maintenance_of_chromosomes_protein_4_[Bombyx_mori]
FPKM:5.89 TPM:2.63
877 A_BomaMSG_c1097_g1_i1
203bp
skin_secretory_protein_xP2-like_[Bombyx_mori]
FPKM:2.38 TPM:1.06
878 A_BomaMSG_c10980_g1_i1
211bp
FPKM:9.50 TPM:4.24
879 A_BomaMSG_c10981_g1_i1
364bp
poly(A)_RNA_polymerase,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0002134 F UTP binding
GO:0003723 F RNA binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006351 P transcription, DNA-templated
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0016740 F transferase activity
GO:0030145 F manganese ion binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071044 P histone mRNA catabolic process
FPKM:3.46 TPM:1.54
880 A_BomaMSG_c10982_g1_i1
268bp
myelin_regulatory_factor_isoform_X1_[Bombyx_mori]
FPKM:5.67 TPM:2.53
881 A_BomaMSG_c10984_g1_i1
541bp
FPKM:0.69 TPM:0.31
882 A_BomaMSG_c10986_g1_i1
386bp
uncharacterized_protein_LOC101741789_[Bombyx_mori]
FPKM:3.70 TPM:1.66
883 A_BomaMSG_c10987_g1_i1
253bp
FPKM:1.29 TPM:0.58
884 A_BomaMSG_c10988_g1_i1
421bp
FPKM:2.90 TPM:1.29
885 A_BomaMSG_c10988_g1_i2
358bp
FPKM:2.37 TPM:1.06
886 A_BomaMSG_c10989_g1_i1
251bp
transmembrane_channel-like_protein_6_[Bombyx_mori]
GO:0005245 F voltage-gated calcium channel activity
GO:0006810 P transport
GO:0006811 P ion transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032426 C stereocilium tip
GO:0050910 P detection of mechanical stimulus involved in sensory perception of sound
GO:0060005 P vestibular reflex
GO:0070588 P calcium ion transmembrane transport
FPKM:2.64 TPM:1.18
887 A_BomaMSG_c1098_g1_i1
260bp
rho_GTPase-activating_protein_26_[Bombyx_mori]
GO:0005096 F GTPase activator activity
GO:0005543 F phospholipid binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005925 C focal adhesion
GO:0007165 P signal transduction
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0043547 P positive regulation of GTPase activity
GO:0051056 P regulation of small GTPase mediated signal transduction
FPKM:3.04 TPM:1.36
888 A_BomaMSG_c10992_g1_i1
632bp
FPKM:102.83 TPM:45.95
889 A_BomaMSG_c10994_g1_i1
268bp
serine/threonine-protein_kinase_OSR1_[Bombyx_mori]
FPKM:7.37 TPM:3.29
890 A_BomaMSG_c10995_g1_i1
224bp
FPKM:2.66 TPM:1.19
891 A_BomaMSG_c10996_g1_i1
383bp
protein_mahjong_isoform_X2_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0016567 P protein ubiquitination
GO:0035212 P cell competition in a multicellular organism
FPKM:5.48 TPM:2.45
892 A_BomaMSG_c10997_g1_i1
376bp
unconventional_myosin-IXa_isoform_X4_[Bombyx_mori]
FPKM:1.49 TPM:0.66
893 A_BomaMSG_c10998_g1_i1
220bp
chondroitin_sulfate_synthase_1_[Bombyx_mori]
FPKM:5.59 TPM:2.50
894 A_BomaMSG_c10999_g1_i1
558bp
ribosomal_protein_L27A_[Bombyx_mori]
GO:0003735 F structural constituent of ribosome
GO:0005622 C intracellular anatomical structure
GO:0005840 C ribosome
GO:0006412 P translation
GO:0015934 C large ribosomal subunit
GO:0030529 C ribonucleoprotein complex
FPKM:1573.11 TPM:702.98
895 A_BomaMSG_c1099_g1_i1
1295bp
multiprotein_bridging_factor_1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0005634 C nucleus
GO:0005669 C transcription factor TFIID complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0043388 P positive regulation of DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0044822 F RNA binding
GO:0070062 C extracellular exosome
FPKM:47.97 TPM:21.44
896 A_BomaMSG_c109_g1_i1
310bp
FPKM:5.03 TPM:2.25
897 A_BomaMSG_c10_g1_i1
239bp
FPKM:1.49 TPM:0.67
898 A_BomaMSG_c11000_g1_i1
232bp
small_subunit_processome_component_20_homolog_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0030686 C 90S preribosome
GO:0032040 C small-subunit processome
GO:0044822 F RNA binding
FPKM:2.41 TPM:1.08
899 A_BomaMSG_c11001_g1_i1
348bp
FPKM:14.25 TPM:6.37
900 A_BomaMSG_c11003_g1_i1
351bp
FPKM:4.01 TPM:1.79
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