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Search Assembled RNA-Seq

No.

Name
Length

Chromosome No./Scaffold Id
Scaffold Length

BLAST (vs nr)

Gene ontology

Transcript
Level

451

A_BomaMSG_c10532_g1_i1

537bp

zinc_finger_protein_660-like_[Bombyx_mori]

GO:0002437	P	inflammatory response to antigenic stimulus
GO:0002829	P	negative regulation of type 2 immune response
GO:0003676	F	nucleic acid binding
GO:0003677	F	DNA binding
GO:0003700	F	DNA-binding transcription factor activity
GO:0005634	C	nucleus
GO:0006351	P	transcription, DNA-templated
GO:0006355	P	regulation of transcription, DNA-templated
GO:0007275	P	multicellular organism development
GO:0007283	P	spermatogenesis
GO:0030154	P	cell differentiation
GO:0045629	P	negative regulation of T-helper 2 cell differentiation
GO:0046872	F	metal ion binding

FPKM:1.91 TPM:0.85

452

A_BomaMSG_c10533_g1_i1

259bp

unconventional_myosin-Va_[Bombyx_mori]

FPKM:1.18 TPM:0.53

453

A_BomaMSG_c10533_g1_i2

1028bp

unconventional_myosin-Va_[Bombyx_mori]

GO:0000146	F	microfilament motor activity
GO:0000166	F	nucleotide binding
GO:0003091	P	renal water homeostasis
GO:0003774	F	cytoskeletal motor activity
GO:0003779	F	actin binding
GO:0005515	F	protein binding
GO:0005516	F	calmodulin binding
GO:0005524	F	ATP binding
GO:0005737	C	cytoplasm
GO:0006810	P	transport
GO:0008152	P	metabolic process
GO:0015031	P	protein transport
GO:0016192	P	vesicle-mediated transport
GO:0016459	C	myosin complex
GO:0017137	F	small GTPase binding
GO:0030659	C	cytoplasmic vesicle membrane
GO:0032439	P	endosomal transport
GO:0043234	C	protein-containing complex
GO:0045179	C	apical cortex
GO:0055037	C	recycling endosome
GO:0070062	C	extracellular exosome

FPKM:4.99 TPM:2.23

454

A_BomaMSG_c10534_g1_i1

1180bp

uncharacterized_protein_LOC101745326_[Bombyx_mori]

GO:0002230	P	positive regulation of defense response to virus by host
GO:0003677	F	DNA binding
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0005694	C	chromosome
GO:0007399	P	nervous system development
GO:0010369	C	chromocenter
GO:0040014	P	regulation of multicellular organism growth
GO:0042593	P	glucose homeostasis
GO:0044708	P	behavior
GO:0060399	P	positive regulation of growth hormone receptor signaling pathway
GO:0070062	C	extracellular exosome
GO:0098779	P	positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792	P	xenophagy

FPKM:3.33 TPM:1.49

455

A_BomaMSG_c10535_g1_i1

512bp

FPKM:4.46 TPM:1.99

456

A_BomaMSG_c10536_g1_i1

298bp

FPKM:4.08 TPM:1.82

457

A_BomaMSG_c10537_g1_i1

385bp

histone-arginine_methyltransferase_CARMER_[Bombyx_mori]

FPKM:3.72 TPM:1.66

458

A_BomaMSG_c10538_g1_i1

445bp

FPKM:6.39 TPM:2.85

459

A_BomaMSG_c1053_g1_i1

366bp

FPKM:2.49 TPM:1.11

460

A_BomaMSG_c10540_g1_i1

691bp

protein_NDRG3_[Bombyx_mori]

GO:0005737	C	cytoplasm
GO:0070062	C	extracellular exosome

FPKM:2.36 TPM:1.06

461

A_BomaMSG_c10541_g1_i1

247bp

FPKM:2.74 TPM:1.23

462

A_BomaMSG_c10542_g1_i1

431bp

clustered_mitochondria_protein_homolog_isoform_X3_[Bombyx_mori]

GO:0003674	F	molecular_function
GO:0005575	C	cellular_component
GO:0005737	C	cytoplasm
GO:0007005	P	mitochondrion organization
GO:0008150	P	biological_process
GO:0048312	P	intracellular distribution of mitochondria

FPKM:3.59 TPM:1.60

463

A_BomaMSG_c10543_g1_i1

766bp

tyrosine-protein_kinase_Btk29A_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0004672	F	protein kinase activity
GO:0004713	F	protein tyrosine kinase activity
GO:0004715	F	non-membrane spanning protein tyrosine kinase activity
GO:0005102	F	signaling receptor binding
GO:0005524	F	ATP binding
GO:0005737	C	cytoplasm
GO:0005886	C	plasma membrane
GO:0006468	P	protein phosphorylation
GO:0007169	P	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007254	P	JNK cascade
GO:0007300	P	ovarian nurse cell to oocyte transport
GO:0007301	P	female germline ring canal formation
GO:0007349	P	cellularization
GO:0007391	P	dorsal closure
GO:0007424	P	open tracheal system development
GO:0007435	P	salivary gland morphogenesis
GO:0007476	P	imaginal disc-derived wing morphogenesis
GO:0007485	P	imaginal disc-derived male genitalia development
GO:0007619	P	courtship behavior
GO:0008258	P	head involution
GO:0008340	P	determination of adult lifespan
GO:0016301	F	kinase activity
GO:0016310	P	phosphorylation
GO:0016740	F	transferase activity
GO:0018108	P	peptidyl-tyrosine phosphorylation
GO:0030036	P	actin cytoskeleton organization
GO:0030717	P	oocyte karyosome formation
GO:0030723	P	ovarian fusome organization
GO:0030833	P	regulation of actin filament polymerization
GO:0031234	C	extrinsic component of cytoplasmic side of plasma membrane
GO:0035277	P	spiracle morphogenesis, open tracheal system
GO:0035556	P	intracellular signal transduction
GO:0038083	P	peptidyl-tyrosine autophosphorylation
GO:0042023	P	DNA endoreduplication
GO:0042127	P	regulation of cell population proliferation
GO:0044719	P	regulation of imaginal disc-derived wing size
GO:0045087	P	innate immune response
GO:0045172	C	germline ring canal
GO:0045177	C	apical part of cell
GO:0046872	F	metal ion binding
GO:0046960	P	sensitization
GO:0048477	P	oogenesis
GO:0071944	C	cell periphery

FPKM:2.62 TPM:1.17

464

A_BomaMSG_c10545_g1_i1

1263bp

uncharacterized_protein_LOC110370969_[Helicoverpa_armigera]

FPKM:3.15 TPM:1.41

465

A_BomaMSG_c10546_g1_i1

965bp

ATP-dependent_RNA_helicase_DHX36_isoform_X2_[Bombyx_mori]

GO:0000166	F	nucleotide binding
GO:0000228	C	nuclear chromosome
GO:0000785	C	chromatin
GO:0000805	C	X chromosome
GO:0003676	F	nucleic acid binding
GO:0003682	F	chromatin binding
GO:0003723	F	RNA binding
GO:0003724	F	RNA helicase activity
GO:0003725	F	double-stranded RNA binding
GO:0004004	F	RNA helicase activity
GO:0004386	F	helicase activity
GO:0005524	F	ATP binding
GO:0005634	C	nucleus
GO:0005665	C	RNA polymerase II, core complex
GO:0005694	C	chromosome
GO:0005700	C	polytene chromosome
GO:0005737	C	cytoplasm
GO:0006396	P	RNA processing
GO:0007549	P	dosage compensation
GO:0008026	F	helicase activity
GO:0008340	P	determination of adult lifespan
GO:0009047	P	dosage compensation by hyperactivation of X chromosome
GO:0016456	C	X chromosome located dosage compensation complex, transcription activating
GO:0016457	P	dosage compensation complex assembly involved in dosage compensation by hyperactivation of X chromosome
GO:0016787	F	hydrolase activity
GO:0031453	P	positive regulation of heterochromatin assembly
GO:0044822	F	RNA binding
GO:0045433	P	male courtship behavior, veined wing generated song production
GO:0045944	P	positive regulation of transcription by RNA polymerase II
GO:0048675	P	axon extension
GO:0072487	C	MSL complex

FPKM:2.89 TPM:1.29

466

A_BomaMSG_c10547_g1_i1

653bp

ubiquitin_carboxyl-terminal_hydrolase_34_[Bombyx_mori]

GO:0000124	C	SAGA complex
GO:0004197	F	cysteine-type endopeptidase activity
GO:0004843	F	thiol-dependent deubiquitinase
GO:0005515	F	protein binding
GO:0005829	C	cytosol
GO:0006355	P	regulation of transcription, DNA-templated
GO:0006508	P	proteolysis
GO:0006511	P	ubiquitin-dependent protein catabolic process
GO:0008233	F	peptidase activity
GO:0008234	F	cysteine-type peptidase activity
GO:0016055	P	Wnt signaling pathway
GO:0016578	P	histone deubiquitination
GO:0016579	P	protein deubiquitination
GO:0016787	F	hydrolase activity
GO:0036459	F	thiol-dependent deubiquitinase
GO:0071108	P	protein K48-linked deubiquitination
GO:0090263	P	positive regulation of canonical Wnt signaling pathway

FPKM:2.54 TPM:1.14

467

A_BomaMSG_c10548_g1_i1

392bp

FPKM:6.03 TPM:2.70

468

A_BomaMSG_c10548_g1_i2

281bp

FPKM:2.70 TPM:1.21

469

A_BomaMSG_c10549_g1_i1

720bp

BAH_and_coiled-coil_domain-containing_protein_1_isoform_X1_[Bombyx_mori]

GO:0000785	C	chromatin
GO:0000976	F	transcription cis-regulatory region binding
GO:0003682	F	chromatin binding
GO:0005634	C	nucleus
GO:0005677	C	chromatin silencing complex
GO:0005694	C	chromosome
GO:0006342	P	heterochromatin assembly
GO:0007275	P	multicellular organism development
GO:0007560	P	imaginal disc morphogenesis
GO:0030154	P	cell differentiation
GO:0031507	P	heterochromatin assembly