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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
391 A_BomaMSG_c10474_g1_i1
580bp
Golgi-associated_PDZ_and_coiled-coil_motif-containing_protein_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005109 F frizzled binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006914 P autophagy
GO:0007289 P spermatid nucleus differentiation
GO:0008022 F protein C-terminus binding
GO:0014069 C postsynaptic density
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019905 F syntaxin binding
GO:0030054 C cell junction
GO:0030140 C trans-Golgi network transport vesicle
GO:0030425 C dendrite
GO:0030695 F GTPase regulator activity
GO:0042803 F protein homodimerization activity
GO:0042995 C cell projection
GO:0043234 C protein-containing complex
GO:0044325 F transmembrane transporter binding
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
GO:0050790 P regulation of catalytic activity
GO:0051260 P protein homooligomerization
FPKM:2.66 TPM:1.19
392 A_BomaMSG_c10475_g1_i1
279bp
FPKM:21.29 TPM:9.51
393 A_BomaMSG_c10477_g1_i1
559bp
transcriptional_repressor_p66-alpha_isoform_X1_[Bombyx_mori]
FPKM:8.56 TPM:3.82
394 A_BomaMSG_c10479_g1_i1
1846bp
uncharacterized_protein_LOC101741261_[Bombyx_mori]
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
FPKM:43.45 TPM:19.42
395 A_BomaMSG_c1047_g1_i1
424bp
CCAAT/enhancer-binding_protein_zeta_isoform_X2_[Bombyx_mori]
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
FPKM:3.68 TPM:1.65
396 A_BomaMSG_c10480_g1_i1
256bp
nuclear_pore_complex_protein_Nup98-Nup96_[Bombyx_mori]
FPKM:7.55 TPM:3.37
397 A_BomaMSG_c10481_g1_i1
470bp
RNA-binding_protein_26_isoform_X6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0006397 P mRNA processing
GO:0010923 P negative regulation of phosphatase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
FPKM:4.21 TPM:1.88
398 A_BomaMSG_c10482_g1_i1
559bp
FPKM:5.60 TPM:2.50
399 A_BomaMSG_c10483_g1_i1
278bp
FPKM:5.23 TPM:2.34
400 A_BomaMSG_c10483_g1_i2
243bp
FPKM:0.00 TPM:0.00
401 A_BomaMSG_c10485_g1_i1
263bp
enoyl-CoA_hydratase_domain-containing_protein_2,_mitochondrial_[Bombyx_mori]
GO:0003824 F catalytic activity
GO:0005739 C mitochondrion
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0008152 P metabolic process
GO:0016829 F lyase activity
FPKM:6.50 TPM:2.91
402 A_BomaMSG_c10486_g1_i1
462bp
putative_uncharacterized_protein_DDB_G0282133_[Bombyx_mori]
FPKM:2.16 TPM:0.96
403 A_BomaMSG_c10489_g1_i1
417bp
uncharacterized_protein_LOC110385892_[Bombyx_mori]
FPKM:4.79 TPM:2.14
404 A_BomaMSG_c10490_g1_i1
443bp
FPKM:4.36 TPM:1.95
405 A_BomaMSG_c10491_g1_i1
327bp
FPKM:4.55 TPM:2.03
406 A_BomaMSG_c10493_g1_i1
322bp
FPKM:2.34 TPM:1.05
407 A_BomaMSG_c10494_g1_i1
1208bp
zinc_finger_protein-like_1_homolog_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0046872 F metal ion binding
FPKM:55.43 TPM:24.77
408 A_BomaMSG_c10496_g1_i1
313bp
endophilin-A_isoform_X3_[Bombyx_mori]
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006897 P endocytosis
GO:0016020 C membrane
GO:0042171 F lysophosphatidic acid acyltransferase activity
GO:0048488 P synaptic vesicle endocytosis
GO:0050803 P regulation of synapse structure or activity
FPKM:2.88 TPM:1.29
409 A_BomaMSG_c10499_g1_i1
2017bp
hsc70-interacting_protein_[Bombyx_mori]
GO:0005737 C cytoplasm
FPKM:62.67 TPM:28.01
410 A_BomaMSG_c10499_g1_i2
2056bp
hsc70-interacting_protein_[Bombyx_mori]
GO:0005737 C cytoplasm
FPKM:6.94 TPM:3.10
411 A_BomaMSG_c1049_g1_i1
276bp
neurogenic_locus_Notch_protein-like,_partial_[Helicoverpa_armigera]
FPKM:3.19 TPM:1.42
412 A_BomaMSG_c10500_g1_i1
601bp
uncharacterized_protein_LOC101736197_isoform_X3_[Bombyx_mori]
FPKM:0.88 TPM:0.39
413 A_BomaMSG_c10500_g1_i2
586bp
tumor_protein_D54_isoform_X2_[Bombyx_mori]
FPKM:2.18 TPM:0.97
414 A_BomaMSG_c10501_g1_i1
375bp
major_facilitator_superfamily_domain-containing_protein_8_isoform_X2_[Bombyx_mori]
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0006810 P transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0055085 P transmembrane transport
FPKM:7.47 TPM:3.34
415 A_BomaMSG_c10502_g1_i1
502bp
DENN_domain-containing_protein_4C_isoform_X4_[Bombyx_mori]
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005794 C Golgi apparatus
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0032483 P regulation of Rab protein signal transduction
GO:0043547 P positive regulation of GTPase activity
FPKM:4.21 TPM:1.88
416 A_BomaMSG_c10503_g1_i1
689bp
uncharacterized_protein_LOC101739222_[Bombyx_mori]
FPKM:33.72 TPM:15.07
417 A_BomaMSG_c10504_g1_i1
871bp
serine/threonine-protein_phosphatase_2A_regulatory_subunit_B''_subunit_gamma_[Bombyx_mori]
GO:0000226 P microtubule cytoskeleton organization
GO:0001782 P B cell homeostasis
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005813 C centrosome
GO:0005819 C spindle
GO:0030865 P cortical cytoskeleton organization
GO:0043029 P T cell homeostasis
GO:0045579 P positive regulation of B cell differentiation
GO:0046872 F metal ion binding
FPKM:4.95 TPM:2.21
418 A_BomaMSG_c10505_g1_i1
320bp
LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_UBR1_[Bombyx_mori]
FPKM:5.14 TPM:2.29
419 A_BomaMSG_c10506_g1_i1
385bp
mitogen-activated_protein_kinase_kinase_kinase_4_[Bombyx_mori]
FPKM:4.01 TPM:1.79
420 A_BomaMSG_c10507_g1_i1
1270bp
cathepsin_B_precursor_[Bombyx_mori]
GO:0004175 F endopeptidase activity
GO:0004197 F cysteine-type endopeptidase activity
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005764 C lysosome
GO:0005901 C caveola
GO:0006508 P proteolysis
GO:0006914 P autophagy
GO:0007283 P spermatogenesis
GO:0007519 P skeletal muscle tissue development
GO:0008233 F peptidase activity
GO:0008234 F cysteine-type peptidase activity
GO:0009611 P response to wounding
GO:0009612 P response to mechanical stimulus
GO:0009749 P response to glucose
GO:0009897 C external side of plasma membrane
GO:0009986 C cell surface
GO:0014070 P response to organic cyclic compound
GO:0014075 P response to amine
GO:0016324 C apical plasma membrane
GO:0016787 F hydrolase activity
GO:0030984 F kininogen binding
GO:0032403 F protein-containing complex binding
GO:0034097 P response to cytokine
GO:0042277 F peptide binding
GO:0042383 C sarcolemma
GO:0042470 C melanosome
GO:0043434 P response to peptide hormone
GO:0043621 F protein self-association
GO:0045471 P response to ethanol
GO:0048471 C perinuclear region of cytoplasm
GO:0050790 P regulation of catalytic activity
GO:0051603 P proteolysis involved in cellular protein catabolic process
GO:0060548 P negative regulation of cell death
GO:0070670 P response to interleukin-4
GO:0071260 P cellular response to mechanical stimulus
FPKM:60.30 TPM:26.95
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