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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
3631 A_BomaMSG_c13878_g1_i1
581bp
inositol_1,4,5-trisphosphate_receptor_isoform_X5_[Bombyx_mori]
GO:0000280 P nuclear division
GO:0005216 F ion channel activity
GO:0005220 F inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0005262 F calcium channel activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0006979 P response to oxidative stress
GO:0007275 P multicellular organism development
GO:0007591 P molting cycle, chitin-based cuticle
GO:0007601 P visual perception
GO:0007608 P sensory perception of smell
GO:0007629 P flight behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016319 P mushroom body development
GO:0030322 P stabilization of membrane potential
GO:0030536 P larval feeding behavior
GO:0035071 P salivary gland cell autophagic cell death
GO:0042594 P response to starvation
GO:0048016 P inositol phosphate-mediated signaling
GO:0050896 P response to stimulus
GO:0050909 P sensory perception of taste
GO:0051209 P release of sequestered calcium ion into cytosol
GO:0051482 P positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G protein-coupled signaling pathway
GO:0055085 P transmembrane transport
GO:0055089 P fatty acid homeostasis
GO:0060259 P regulation of feeding behavior
GO:0070588 P calcium ion transmembrane transport
FPKM:3.59 TPM:1.61
3632 A_BomaMSG_c13879_g1_i1
277bp
FPKM:4.22 TPM:1.89
3633 A_BomaMSG_c13880_g1_i1
345bp
coiled-coil-helix-coiled-coil-helix_domain-containing_protein_7_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
FPKM:32.41 TPM:14.48
3634 A_BomaMSG_c13880_g1_i2
421bp
coiled-coil-helix-coiled-coil-helix_domain-containing_protein_7_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0005758 C mitochondrial intermembrane space
FPKM:3.96 TPM:1.77
3635 A_BomaMSG_c13881_g1_i1
258bp
anoctamin-4_isoform_X2_[Bombyx_mori]
GO:0005229 F intracellular calcium activated chloride channel activity
GO:0005622 C intracellular anatomical structure
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006821 P chloride transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0017128 F phospholipid scramblase activity
GO:0046983 F protein dimerization activity
GO:0061588 P calcium activated phospholipid scrambling
GO:0061589 P calcium activated phosphatidylserine scrambling
GO:0061590 P calcium activated phosphatidylcholine scrambling
GO:0061591 P calcium activated galactosylceramide scrambling
GO:1902476 P chloride transmembrane transport
FPKM:6.18 TPM:2.76
3636 A_BomaMSG_c13883_g1_i1
462bp
probable_ATP-dependent_RNA_helicase_DHX34_[Bombyx_mori]
FPKM:2.16 TPM:0.96
3637 A_BomaMSG_c13884_g1_i1
632bp
FPKM:2.37 TPM:1.06
3638 A_BomaMSG_c13886_g1_i1
206bp
E3_ubiquitin-protein_ligase_NRDP1_isoform_X2_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0016881 F acid-amino acid ligase activity
GO:0030318 P melanocyte differentiation
GO:0031386 F protein tag
GO:0046872 F metal ion binding
GO:0097191 P extrinsic apoptotic signaling pathway
FPKM:2.27 TPM:1.02
3639 A_BomaMSG_c13887_g1_i1
275bp
lysine-specific_demethylase_3B_[Bombyx_mori]
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0016209 F antioxidant activity
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016577 P histone demethylation
GO:0032452 F histone demethylase activity
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0072718 P response to cisplatin
GO:0098869 P cellular oxidant detoxification
FPKM:5.36 TPM:2.39
3640 A_BomaMSG_c13889_g1_i1
701bp
uncharacterized_LOC101739914_isoform_X1_[Bombyx_mori]
FPKM:2.81 TPM:1.26
3641 A_BomaMSG_c1388_g1_i1
832bp
gem-associated_protein_5_[Bombyx_mori]
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0006461 P protein-containing complex assembly
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016604 C nuclear body
GO:0017069 F snRNA binding
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
GO:0044822 F RNA binding
GO:0051170 P import into nucleus
GO:0097504 C Gemini of coiled bodies
FPKM:4.64 TPM:2.07
3642 A_BomaMSG_c13890_g1_i1
237bp
FPKM:4.57 TPM:2.04
3643 A_BomaMSG_c13891_g1_i1
513bp
FPKM:0.74 TPM:0.33
3644 A_BomaMSG_c13892_g1_i1
380bp
FPKM:5.55 TPM:2.48
3645 A_BomaMSG_c13893_g1_i1
243bp
FPKM:15.68 TPM:7.01
3646 A_BomaMSG_c13894_g1_i1
506bp
uncharacterized_protein_LOC101736297_[Bombyx_mori]
FPKM:1.89 TPM:0.84
3647 A_BomaMSG_c13895_g1_i1
431bp
FPKM:4.55 TPM:2.03
3648 A_BomaMSG_c13896_g1_i1
697bp
CCR4-NOT_transcription_complex_subunit_7_isoform_X2_[Bombyx_mori]
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000932 C P-body
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0010629 P negative regulation of gene expression
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0030014 C CCR4-NOT complex
GO:0031047 P gene silencing by RNA
GO:0033962 P P-body assembly
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0061014 P positive regulation of mRNA catabolic process
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
FPKM:3.57 TPM:1.59
3649 A_BomaMSG_c13897_g1_i1
317bp
FPKM:2.81 TPM:1.26
3650 A_BomaMSG_c13897_g1_i2
212bp
FPKM:0.00 TPM:0.00
3651 A_BomaMSG_c13898_g1_i1
340bp
FPKM:2.12 TPM:0.95
3652 A_BomaMSG_c1389_g1_i1
293bp
FPKM:1.41 TPM:0.63
3653 A_BomaMSG_c13900_g1_i1
255bp
protein_disks_lost_[Bombyx_mori]
FPKM:5.08 TPM:2.27
3654 A_BomaMSG_c13901_g1_i1
594bp
FPKM:2.58 TPM:1.15
3655 A_BomaMSG_c13903_g1_i1
245bp
FPKM:2.10 TPM:0.94
3656 A_BomaMSG_c13905_g1_i1
283bp
FPKM:3.02 TPM:1.35
3657 A_BomaMSG_c13906_g1_i1
391bp
putative_F-box_and_leucine-rich_repeat_protein_7_[Operophtera_brumata]
GO:0008150 P biological_process
FPKM:1.95 TPM:0.87
3658 A_BomaMSG_c13907_g1_i1
283bp
FPKM:2.52 TPM:1.13
3659 A_BomaMSG_c13908_g1_i1
381bp
polycomb_protein_Sfmbt_isoform_X1_[Bombyx_mori]
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0006342 P heterochromatin assembly
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007446 P imaginal disc growth
GO:0008270 F zinc ion binding
GO:0016568 P chromatin organization
GO:0035064 F methylated histone binding
GO:0046872 F metal ion binding
FPKM:5.53 TPM:2.47
3660 A_BomaMSG_c1390_g1_i1
282bp
FPKM:4.57 TPM:2.04
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