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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
2881 A_BomaMSG_c13099_g1_i1
241bp
uncharacterized_protein_LOC101735710_isoform_X7_[Bombyx_mori]
FPKM:2.92 TPM:1.30
2882 A_BomaMSG_c1309_g1_i1
227bp
brain_tumor_protein_[Athalia_rosae]
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006909 P phagocytosis
GO:0007400 P neuroblast fate determination
GO:0007402 P ganglion mother cell fate determination
GO:0007405 P neuroblast proliferation
GO:0007406 P negative regulation of neuroblast proliferation
GO:0007411 P axon guidance
GO:0007419 P ventral cord development
GO:0007420 P brain development
GO:0008270 F zinc ion binding
GO:0008285 P negative regulation of cell population proliferation
GO:0008356 P asymmetric cell division
GO:0008582 P regulation of synaptic assembly at neuromuscular junction
GO:0009303 P rRNA transcription
GO:0017148 P negative regulation of translation
GO:0022008 P neurogenesis
GO:0030182 P neuron differentiation
GO:0030371 F translation repressor activity
GO:0035282 P segmentation
GO:0043025 C neuronal cell body
GO:0045179 C apical cortex
GO:0045180 C basal cortex
GO:0045182 F translation regulator activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0050767 P regulation of neurogenesis
GO:0051726 P regulation of cell cycle
GO:0055060 P asymmetric neuroblast division resulting in ganglion mother cell formation
GO:1900242 P regulation of synaptic vesicle endocytosis
FPKM:10.24 TPM:4.58
2883 A_BomaMSG_c13100_g1_i1
324bp
FPKM:4.63 TPM:2.07
2884 A_BomaMSG_c13100_g2_i1
257bp
FPKM:1.87 TPM:0.84
2885 A_BomaMSG_c13102_g1_i1
453bp
FPKM:1.55 TPM:0.69
2886 A_BomaMSG_c13103_g1_i1
250bp
uncharacterized_protein_LOC101742795_[Bombyx_mori]
FPKM:3.92 TPM:1.75
2887 A_BomaMSG_c13104_g1_i1
397bp
retinol_dehydrogenase_11_[Bombyx_mori]
GO:0001523 P retinoid metabolic process
GO:0001917 C photoreceptor inner segment
GO:0004745 F NAD-retinol dehydrogenase activity
GO:0005622 C intracellular anatomical structure
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016062 P adaptation of rhodopsin mediated signaling
GO:0016491 F oxidoreductase activity
GO:0016616 F oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0042572 P retinol metabolic process
GO:0042574 P retinal metabolic process
GO:0052650 F NADP-retinol dehydrogenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:3.54 TPM:1.58
2888 A_BomaMSG_c13105_g1_i1
268bp
FPKM:0.57 TPM:0.25
2889 A_BomaMSG_c13106_g1_i1
246bp
peroxisomal_acyl-coenzyme_A_oxidase_3_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005102 F signaling receptor binding
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005782 C peroxisomal matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016402 F pristanoyl-CoA oxidase activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
FPKM:0.00 TPM:0.00
2890 A_BomaMSG_c13106_g1_i2
513bp
peroxisomal_acyl-coenzyme_A_oxidase_3_[Bombyx_mori]
GO:0000062 F fatty-acyl-CoA binding
GO:0003995 F acyl-CoA dehydrogenase activity
GO:0003997 F acyl-CoA oxidase activity
GO:0005102 F signaling receptor binding
GO:0005739 C mitochondrion
GO:0005777 C peroxisome
GO:0005782 C peroxisomal matrix
GO:0006629 P lipid metabolic process
GO:0006631 P fatty acid metabolic process
GO:0006635 P fatty acid beta-oxidation
GO:0008152 P metabolic process
GO:0009055 F electron transfer activity
GO:0016020 C membrane
GO:0016402 F pristanoyl-CoA oxidase activity
GO:0016491 F oxidoreductase activity
GO:0016627 F oxidoreductase activity, acting on the CH-CH group of donors
GO:0033539 P fatty acid beta-oxidation using acyl-CoA dehydrogenase
GO:0033540 P fatty acid beta-oxidation using acyl-CoA oxidase
GO:0050660 F flavin adenine dinucleotide binding
GO:0052890 F oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor
GO:0055088 P lipid homeostasis
GO:0055114 P obsolete oxidation-reduction process
FPKM:3.71 TPM:1.66
2891 A_BomaMSG_c13107_g1_i1
497bp
PREDICTED:_serine/threonine-protein_kinase_OSR1-like_[Amyelois_transitella]
GO:0000166 F nucleotide binding
GO:0001933 P negative regulation of protein phosphorylation
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0006468 P protein phosphorylation
GO:0008217 P regulation of blood pressure
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016323 C basolateral plasma membrane
GO:0016324 C apical plasma membrane
GO:0016740 F transferase activity
GO:0018105 P peptidyl-serine phosphorylation
GO:0018107 P peptidyl-threonine phosphorylation
GO:0019901 F protein kinase binding
GO:0023014 P signal transduction
GO:0035556 P intracellular signal transduction
GO:0043268 P positive regulation of potassium ion transport
GO:0050727 P regulation of inflammatory response
GO:0071476 P cellular hypotonic response
GO:0090188 P negative regulation of pancreatic juice secretion
GO:1901017 P negative regulation of potassium ion transmembrane transporter activity
GO:1901380 P negative regulation of potassium ion transmembrane transport
GO:2000021 P ion homeostasis
GO:2000681 P obsolete negative regulation of rubidium ion transport
GO:2000687 P obsolete negative regulation of rubidium ion transmembrane transporter activity
FPKM:1.75 TPM:0.78
2892 A_BomaMSG_c13108_g1_i1
350bp
MKL/myocardin-like_protein_1_isoform_X1_[Bombyx_mori]
FPKM:4.70 TPM:2.10
2893 A_BomaMSG_c13109_g1_i1
532bp
apolipophorin-III_precursor_[Bombyx_mandarina]
GO:0005576 C extracellular region
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008289 F lipid binding
FPKM:5.99 TPM:2.68
2894 A_BomaMSG_c1310_g1_i1
494bp
zinc_finger_protein_Xfin_isoform_X2_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001666 P response to hypoxia
GO:0001822 P kidney development
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007576 P nucleolar fragmentation
GO:0007605 P sensory perception of sound
GO:0046872 F metal ion binding
GO:0051593 P response to folic acid
FPKM:1.96 TPM:0.87
2895 A_BomaMSG_c13111_g1_i1
386bp
nuclear_pore_complex_protein_Nup107_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
FPKM:0.00 TPM:0.00
2896 A_BomaMSG_c13111_g1_i2
547bp
nuclear_pore_complex_protein_Nup107_[Bombyx_mori]
GO:0000775 C chromosome, centromeric region
GO:0000776 C kinetochore
GO:0000777 C kinetochore
GO:0000973 P posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0005813 C centrosome
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006406 P mRNA export from nucleus
GO:0006409 P tRNA export from nucleus
GO:0006606 P protein import into nucleus
GO:0006810 P transport
GO:0007062 P sister chromatid cohesion
GO:0007077 P mitotic nuclear membrane disassembly
GO:0010827 P regulation of glucose transmembrane transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016032 P viral process
GO:0016925 P protein sumoylation
GO:0017056 F structural constituent of nuclear pore
GO:0019083 P viral transcription
GO:0031047 P gene silencing by RNA
GO:0031080 C nuclear pore outer ring
GO:0031965 C nuclear membrane
GO:0034399 C nuclear periphery
GO:0051028 P mRNA transport
GO:0051292 P nuclear pore complex assembly
GO:0075733 P intracellular transport of virus
GO:1900034 P regulation of cellular response to heat
FPKM:3.39 TPM:1.52
2897 A_BomaMSG_c13112_g1_i1
256bp
phosphorylase_b_kinase_gamma_catalytic_chain,_skeletal_muscle/heart_isoform_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004689 F phosphorylase kinase activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005829 C cytosol
GO:0005964 C phosphorylase kinase complex
GO:0005975 P carbohydrate metabolic process
GO:0005977 P glycogen metabolic process
GO:0005978 P glycogen biosynthetic process
GO:0005980 P glycogen catabolic process
GO:0006468 P protein phosphorylation
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0019899 F enzyme binding
GO:0050321 F tau-protein kinase activity
FPKM:5.03 TPM:2.25
2898 A_BomaMSG_c13114_g1_i1
215bp
FPKM:0.00 TPM:0.00
2899 A_BomaMSG_c13118_g1_i1
298bp
cytosolic_carboxypeptidase-like_protein_5_isoform_X3_[Bombyx_mori]
FPKM:9.52 TPM:4.25
2900 A_BomaMSG_c13119_g1_i1
637bp
FPKM:2.90 TPM:1.30
2901 A_BomaMSG_c1311_g1_i1
450bp
FPKM:1.57 TPM:0.70
2902 A_BomaMSG_c13120_g1_i1
570bp
RNA-binding_protein_26_isoform_X1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0006397 P mRNA processing
GO:0010923 P negative regulation of phosphatase activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
FPKM:1.98 TPM:0.89
2903 A_BomaMSG_c13120_g1_i2
628bp
RNA-binding_protein_26_isoform_X6_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0006397 P mRNA processing
GO:0010923 P negative regulation of phosphatase activity
GO:0046872 F metal ion binding
FPKM:2.34 TPM:1.05
2904 A_BomaMSG_c13121_g1_i1
498bp
helicase_domino-like_[Helicoverpa_armigera]
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0003713 F transcription coactivator activity
GO:0004386 F helicase activity
GO:0004402 F histone acetyltransferase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005794 C Golgi apparatus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0016032 P viral process
GO:0016568 P chromatin organization
GO:0016573 P histone acetylation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0048471 C perinuclear region of cytoplasm
FPKM:4.83 TPM:2.16
2905 A_BomaMSG_c13122_g1_i1
478bp
HEAT_repeat-containing_protein_1_isoform_X2_[Bombyx_mori]
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0009267 P cellular response to starvation
GO:0022008 P neurogenesis
GO:0030515 F snoRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030686 C 90S preribosome
GO:0032040 C small-subunit processome
GO:0034455 C t-UTP complex
GO:0042254 P ribosome biogenesis
GO:0045943 P positive regulation of transcription by RNA polymerase I
FPKM:2.46 TPM:1.10
2906 A_BomaMSG_c13123_g1_i1
430bp
PREDICTED:_dynein_heavy_chain,_cytoplasmic_[Plutella_xylostella]
GO:0000166 F nucleotide binding
GO:0000776 C kinetochore
GO:0003774 F cytoskeletal motor activity
GO:0003777 F microtubule motor activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0005868 C cytoplasmic dynein complex
GO:0005874 C microtubule
GO:0005875 C microtubule associated complex
GO:0005938 C cell cortex
GO:0006886 P intracellular protein transport
GO:0007018 P microtubule-based movement
GO:0007051 P spindle organization
GO:0007052 P mitotic spindle organization
GO:0007067 P mitotic cell cycle
GO:0007098 P centrosome cycle
GO:0007279 P pole cell formation
GO:0007282 P cystoblast division
GO:0007294 P germarium-derived oocyte fate determination
GO:0007298 P border follicle cell migration
GO:0007301 P female germline ring canal formation
GO:0007312 P oocyte nucleus migration involved in oocyte dorsal/ventral axis specification
GO:0007349 P cellularization
GO:0007405 P neuroblast proliferation
GO:0008088 P axo-dendritic transport
GO:0008090 P retrograde axonal transport
GO:0008298 P intracellular mRNA localization
GO:0008569 F minus-end-directed microtubule motor activity
GO:0016319 P mushroom body development
GO:0016887 F ATP hydrolysis activity
GO:0030071 P regulation of mitotic metaphase/anaphase transition
GO:0030286 C dynein complex
GO:0030529 C ribonucleoprotein complex
GO:0030723 P ovarian fusome organization
GO:0034063 P stress granule assembly
GO:0034501 P protein localization to kinetochore
GO:0035011 P melanotic encapsulation of foreign target
GO:0040001 P establishment of mitotic spindle localization
GO:0040003 P chitin-based cuticle development
GO:0042623 F ATP hydrolysis activity
GO:0043005 C neuron projection
GO:0045169 C fusome
GO:0045172 C germline ring canal
GO:0045197 P establishment or maintenance of epithelial cell apical/basal polarity
GO:0045198 P establishment of epithelial cell apical/basal polarity
GO:0045478 P fusome organization
GO:0045505 F dynein intermediate chain binding
GO:0046604 P positive regulation of mitotic centrosome separation
GO:0047497 P mitochondrion transport along microtubule
GO:0048134 P germ-line cyst formation
GO:0048311 P mitochondrion distribution
GO:0048477 P oogenesis
GO:0048813 P dendrite morphogenesis
GO:0050658 P RNA transport
GO:0051237 P maintenance of RNA location
GO:0051642 P centrosome localization
GO:0051683 P establishment of Golgi localization
GO:0051959 F dynein light intermediate chain binding
GO:1904115 C axon cytoplasm
GO:1904801 P positive regulation of neuron remodeling
FPKM:2.16 TPM:0.97
2907 A_BomaMSG_c13124_g1_i1
264bp
alanine--glyoxylate_aminotransferase_2,_mitochondrial_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0004813 F alanine-tRNA ligase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0006412 P translation
GO:0006419 P alanyl-tRNA aminoacylation
GO:0016876 F aminoacyl-tRNA ligase activity
GO:0043039 P tRNA aminoacylation
GO:0046872 F metal ion binding
FPKM:8.79 TPM:3.93
2908 A_BomaMSG_c13125_g1_i1
248bp
FPKM:3.39 TPM:1.52
2909 A_BomaMSG_c13126_g1_i1
554bp
uncharacterized_protein_LOC101746752_isoform_X1_[Bombyx_mori]
FPKM:2.00 TPM:0.89
2910 A_BomaMSG_c13127_g1_i1
208bp
FPKM:0.00 TPM:0.00
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