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Last updated: 2022/11/18

Search Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1981 A_BomaMSG_c12145_g1_i1
438bp
FPKM:5.37 TPM:2.40
1982 A_BomaMSG_c12146_g1_i1
634bp
Yokozuna_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.34 TPM:1.49
1983 A_BomaMSG_c12147_g1_i1
262bp
FPKM:4.18 TPM:1.87
1984 A_BomaMSG_c12148_g1_i1
377bp
DDB1-_and_CUL4-associated_factor_5_isoform_X2_[Bombyx_mori]
GO:0005739 C mitochondrion
GO:0016567 P protein ubiquitination
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
FPKM:6.22 TPM:2.78
1985 A_BomaMSG_c12149_g1_i1
701bp
FPKM:2.81 TPM:1.26
1986 A_BomaMSG_c1214_g1_i1
539bp
FPKM:4.67 TPM:2.09
1987 A_BomaMSG_c12150_g1_i1
460bp
protein_rogdi_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0007611 P learning or memory
GO:0008355 P olfactory learning
GO:0048149 P behavioral response to ethanol
FPKM:8.25 TPM:3.69
1988 A_BomaMSG_c12151_g1_i1
611bp
FPKM:4.67 TPM:2.09
1989 A_BomaMSG_c12152_g1_i1
601bp
probable_phospholipid-transporting_ATPase_IA_isoform_X3_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000287 F magnesium ion binding
GO:0004012 F ATPase-coupled intramembrane lipid transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005802 C trans-Golgi network
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0007612 P learning
GO:0008152 P metabolic process
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016787 F hydrolase activity
GO:0030335 P positive regulation of cell migration
GO:0031410 C cytoplasmic vesicle
GO:0042584 C chromaffin granule membrane
GO:0043231 C intracellular membrane-bounded organelle
GO:0045332 P phospholipid translocation
GO:0046872 F metal ion binding
GO:0048194 P Golgi vesicle budding
GO:0061092 P positive regulation of phospholipid translocation
GO:0070062 C extracellular exosome
FPKM:5.37 TPM:2.40
1990 A_BomaMSG_c12153_g1_i1
1589bp
coatomer_subunit_beta_[Helicoverpa_armigera]
GO:0000139 C Golgi membrane
GO:0005198 F structural molecule activity
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030117 C membrane coat
GO:0030126 C COPI vesicle coat
GO:0030663 C COPI-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
FPKM:35.73 TPM:15.97
1991 A_BomaMSG_c12154_g1_i1
358bp
FPKM:5.82 TPM:2.60
1992 A_BomaMSG_c12155_g1_i1
285bp
FPKM:1.49 TPM:0.67
1993 A_BomaMSG_c12157_g1_i1
637bp
FPKM:1.66 TPM:0.74
1994 A_BomaMSG_c12159_g1_i1
683bp
FPKM:4.67 TPM:2.09
1995 A_BomaMSG_c12160_g1_i1
260bp
uncharacterized_protein_LOC101743084_isoform_X1_[Bombyx_mori]
FPKM:1.82 TPM:0.81
1996 A_BomaMSG_c12160_g2_i1
244bp
uncharacterized_protein_LOC101743084_isoform_X1_[Bombyx_mori]
GO:0004721 F phosphoprotein phosphatase activity
GO:0004725 F protein tyrosine phosphatase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0006470 P protein dephosphorylation
GO:0014066 P regulation of phosphatidylinositol 3-kinase signaling
GO:0016311 P dephosphorylation
GO:0016787 F hydrolase activity
GO:0016791 F phosphatase activity
GO:0030027 C lamellipodium
GO:0035335 P peptidyl-tyrosine dephosphorylation
GO:0036312 F phosphatidylinositol 3-kinase regulatory subunit binding
GO:0042995 C cell projection
GO:0043005 C neuron projection
GO:0044297 C cell body
GO:0070062 C extracellular exosome
FPKM:2.83 TPM:1.26
1997 A_BomaMSG_c12161_g1_i1
295bp
FPKM:6.01 TPM:2.69
1998 A_BomaMSG_c12163_g1_i1
466bp
tetraspanin-5_[Bombyx_mori]
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0007155 P cell adhesion
GO:0007166 P cell surface receptor signaling pathway
GO:0008283 P cell population proliferation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019899 F enzyme binding
GO:0045747 P positive regulation of Notch signaling pathway
GO:0051604 P protein maturation
GO:0090002 P protein localization to plasma membrane
FPKM:1.92 TPM:0.86
1999 A_BomaMSG_c12163_g1_i2
242bp
FPKM:0.00 TPM:0.00
2000 A_BomaMSG_c12167_g1_i1
732bp
FPKM:2.89 TPM:1.29
2001 A_BomaMSG_c12168_g1_i1
303bp
FPKM:0.00 TPM:0.00
2002 A_BomaMSG_c12168_g1_i2
371bp
PREDICTED:_uncharacterized_protein_LOC106710629_[Papilio_machaon]
FPKM:2.13 TPM:0.95
2003 A_BomaMSG_c12169_g1_i1
216bp
rootletin_[Bombyx_mori]
FPKM:3.93 TPM:1.76
2004 A_BomaMSG_c12170_g1_i1
235bp
conserved_hypothetical_protein_[Bathymodiolus_platifrons_methanotrophic_gill_symbiont]
FPKM:0.00 TPM:0.00
2005 A_BomaMSG_c12171_g1_i1
406bp
FPKM:2.10 TPM:0.94
2006 A_BomaMSG_c12172_g1_i1
465bp
protein_TIS11_isoform_X1_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0001570 P vasculogenesis
GO:0003342 P proepicardium development
GO:0003677 F DNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006402 P mRNA catabolic process
GO:0006417 P regulation of translation
GO:0006915 P apoptotic process
GO:0007507 P heart development
GO:0008283 P cell population proliferation
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0021915 P neural tube development
GO:0033077 P T cell differentiation in thymus
GO:0035264 P multicellular organism growth
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0060710 P chorio-allantoic fusion
GO:0060712 P spongiotrophoblast layer development
FPKM:0.94 TPM:0.42
2007 A_BomaMSG_c12172_g1_i2
376bp
protein_TIS11_isoform_X2_[Bombyx_mori]
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0001570 P vasculogenesis
GO:0003342 P proepicardium development
GO:0003677 F DNA binding
GO:0003729 F mRNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006402 P mRNA catabolic process
GO:0006417 P regulation of translation
GO:0006915 P apoptotic process
GO:0007507 P heart development
GO:0008283 P cell population proliferation
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0021915 P neural tube development
GO:0033077 P T cell differentiation in thymus
GO:0035264 P multicellular organism growth
GO:0043488 P regulation of mRNA stability
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048568 P embryonic organ development
GO:0060710 P chorio-allantoic fusion
GO:0060712 P spongiotrophoblast layer development
FPKM:1.07 TPM:0.48
2008 A_BomaMSG_c12173_g1_i1
492bp
FPKM:4.91 TPM:2.20
2009 A_BomaMSG_c12174_g1_i1
363bp
retinoblastoma-like_protein_2_[Bombyx_mori]
GO:0000785 C chromatin
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0016568 P chromatin organization
GO:0051726 P regulation of cell cycle
FPKM:2.84 TPM:1.27
2010 A_BomaMSG_c12175_g1_i1
489bp
flocculation_protein_FLO11-like_[Bombyx_mori]
FPKM:4.37 TPM:1.95
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