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Last updated: 2022/11/18

Search Assembled RNA-Seq

next from show/42653
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology Transcript
Level
1 A_BomaMSG_c10002_g1_i1
305bp
hypothetical_protein_ALC57_12601_[Trachymyrmex_cornetzi]
FPKM:5.20 TPM:2.32
2 A_BomaMSG_c10003_g1_i1
446bp
FPKM:2.27 TPM:1.02
3 A_BomaMSG_c10004_g1_i1
251bp
FPKM:2.64 TPM:1.18
4 A_BomaMSG_c10005_g1_i1
311bp
FPKM:3.37 TPM:1.51
5 A_BomaMSG_c10006_g1_i1
306bp
FPKM:8.60 TPM:3.85
6 A_BomaMSG_c10008_g1_i1
345bp
sedoheptulokinase_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005975 P carbohydrate metabolic process
GO:0009052 P pentose-phosphate shunt, non-oxidative branch
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0016773 F phosphotransferase activity, alcohol group as acceptor
GO:0035963 P cellular response to interleukin-13
GO:0043030 P regulation of macrophage activation
GO:0050277 F sedoheptulokinase activity
GO:0050727 P regulation of inflammatory response
GO:0071222 P cellular response to lipopolysaccharide
GO:0071353 P cellular response to interleukin-4
FPKM:2.76 TPM:1.23
7 A_BomaMSG_c1000_g1_i1
204bp
FPKM:3.52 TPM:1.57
8 A_BomaMSG_c10011_g1_i1
430bp
FPKM:5.53 TPM:2.47
9 A_BomaMSG_c10012_g1_i1
215bp
FPKM:0.00 TPM:0.00
10 A_BomaMSG_c10013_g1_i1
371bp
DNA_replication_ATP-dependent_helicase/nuclease_DNA2_[Bombyx_mori]
GO:0000076 P DNA replication checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000729 P DNA double-strand break processing
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005760 C gamma DNA polymerase complex
GO:0006260 P DNA replication
GO:0006264 P mitochondrial DNA replication
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016890 F site-specific endodeoxyribonuclease activity, specific for altered base
GO:0017108 F 5'-flap endonuclease activity
GO:0032508 P DNA duplex unwinding
GO:0033567 P DNA replication, Okazaki fragment processing
GO:0043137 P DNA replication, removal of RNA primer
GO:0043139 F 5'-3' DNA helicase activity
GO:0043142 F single-stranded DNA helicase activity
GO:0045740 P positive regulation of DNA replication
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
FPKM:3.04 TPM:1.36
11 A_BomaMSG_c10014_g1_i1
268bp
FPKM:7.37 TPM:3.29
12 A_BomaMSG_c10015_g1_i1
277bp
WD_repeat-containing_protein_19_isoform_X1_[Bombyx_mori]
GO:0000902 P cell morphogenesis
GO:0001701 P in utero embryonic development
GO:0003674 F molecular_function
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005929 C cilium
GO:0007224 P smoothened signaling pathway
GO:0008406 P gonad development
GO:0030030 P cell projection organization
GO:0030326 P embryonic limb morphogenesis
GO:0030991 C intraciliary transport particle A
GO:0031076 P embryonic camera-type eye development
GO:0031513 C non-motile cilium
GO:0031514 C motile cilium
GO:0032391 C photoreceptor connecting cilium
GO:0035721 P intraciliary retrograde transport
GO:0042384 P cilium assembly
GO:0042471 P ear morphogenesis
GO:0042995 C cell projection
GO:0048701 P embryonic cranial skeleton morphogenesis
GO:0050877 P nervous system process
GO:0055123 P digestive system development
GO:0060271 P cilium assembly
GO:0060830 P ciliary receptor clustering involved in smoothened signaling pathway
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
GO:0061055 P myotome development
GO:0061512 P protein localization to cilium
FPKM:7.91 TPM:3.53
13 A_BomaMSG_c10016_g1_i1
685bp
LOW_QUALITY_PROTEIN:_uncharacterized_protein_KIAA1109_[Bombyx_mori]
GO:0001558 P regulation of cell growth
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0006629 P lipid metabolic process
GO:0007283 P spermatogenesis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0019915 P lipid storage
GO:0045444 P fat cell differentiation
GO:0051647 P nucleus localization
GO:0060612 P adipose tissue development
FPKM:2.01 TPM:0.90
14 A_BomaMSG_c10017_g1_i1
247bp
FPKM:3.43 TPM:1.53
15 A_BomaMSG_c1001_g1_i1
213bp
FPKM:7.18 TPM:3.21
16 A_BomaMSG_c10020_g1_i1
218bp
Uncharacterized_protein_OBRU01_07814_[Operophtera_brumata]
FPKM:2.87 TPM:1.28
17 A_BomaMSG_c10022_g1_i1
383bp
glycerophosphoryl_diester_phosphodiesterase_precursor_[Bombyx_mori]
GO:0006071 P glycerol metabolic process
GO:0006629 P lipid metabolic process
GO:0008081 F phosphoric diester hydrolase activity
GO:0008889 F glycerophosphodiester phosphodiesterase activity
GO:0009279 C cell outer membrane
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
FPKM:3.75 TPM:1.68
18 A_BomaMSG_c10023_g1_i1
295bp
FPKM:2.31 TPM:1.03
19 A_BomaMSG_c10024_g1_i1
336bp
Golgi-specific_brefeldin_A-resistance_guanine_nucleotide_exchange_factor_1-like_[Helicoverpa_armigera]
FPKM:15.53 TPM:6.94
20 A_BomaMSG_c10026_g1_i1
351bp
FPKM:3.01 TPM:1.34
21 A_BomaMSG_c10027_g1_i1
246bp
FPKM:7.62 TPM:3.40
22 A_BomaMSG_c1002_g1_i1
207bp
FPKM:5.60 TPM:2.50
23 A_BomaMSG_c10030_g1_i1
339bp
E3_ubiquitin-protein_ligase_SIAH1_[Danaus_plexippus_plexippus]
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006915 P apoptotic process
GO:0007275 P multicellular organism development
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051402 P neuron apoptotic process
GO:0061630 F ubiquitin protein ligase activity
FPKM:3.55 TPM:1.59
24 A_BomaMSG_c10033_g1_i1
348bp
prolyl_4-hydroxylase_alpha_subunit_precursor_[Bombyx_mori]
GO:0004656 F procollagen-proline 4-dioxygenase activity
GO:0005506 F iron ion binding
GO:0005783 C endoplasmic reticulum
GO:0005788 C endoplasmic reticulum lumen
GO:0016491 F oxidoreductase activity
GO:0016702 F oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO:0016705 F oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0019511 P peptidyl-proline hydroxylation
GO:0031418 F L-ascorbic acid binding
GO:0031545 F peptidyl-proline 4-dioxygenase activity
GO:0043412 P macromolecule modification
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
FPKM:3.05 TPM:1.36
25 A_BomaMSG_c10034_g1_i1
247bp
FPKM:1.37 TPM:0.61
26 A_BomaMSG_c10035_g1_i1
246bp
FPKM:2.77 TPM:1.24
27 A_BomaMSG_c10035_g1_i2
208bp
FPKM:0.00 TPM:0.00
28 A_BomaMSG_c10036_g1_i1
474bp
FPKM:4.78 TPM:2.13
29 A_BomaMSG_c10039_g1_i1
226bp
acidic_repeat-containing_protein_isoform_X1_[Bombyx_mori]
FPKM:1.73 TPM:0.77
30 A_BomaMSG_c10041_g1_i1
363bp
FPKM:5.68 TPM:2.54
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