SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_BomaMSG_c10013_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		DNA_replication_ATP-dependent_helicase/nuclease_DNA2_[Bombyx_mori]
Ontology
GO:0000076 P DNA replication checkpoint signaling
GO:0000166 F nucleotide binding
GO:0000729 P DNA double-strand break processing
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003824 F catalytic activity
GO:0004386 F helicase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0005760 C gamma DNA polymerase complex
GO:0006260 P DNA replication
GO:0006264 P mitochondrial DNA replication
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0016787 F hydrolase activity
GO:0016890 F site-specific endodeoxyribonuclease activity, specific for altered base
GO:0017108 F 5'-flap endonuclease activity
GO:0032508 P DNA duplex unwinding
GO:0033567 P DNA replication, Okazaki fragment processing
GO:0043137 P DNA replication, removal of RNA primer
GO:0043139 F 5'-3' DNA helicase activity
GO:0043142 F single-stranded DNA helicase activity
GO:0045740 P positive regulation of DNA replication
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:3.04 TPM:1.36
ORF EntryO_BomaMSG2230_internal:A_BomaMSG_c10013_g1_i1
Sequence
(Nucleotide)
TACAGCCTCTCAACGATTTCATGAAGAGCTATGTCGTTTCCAAGGCCAGCCATGGAATTA
TGCAGAATAACAAAGAAAACTGGAACGGTCATATTGATAAAGTTTTGGATATAGAAGAAA
ATATATGCTGTCCACAATTAGGACTGAAAGGGAAGATCGATGCCACTTTGCAAGTTACTG
TACCTGAAAAAAATGGTTTCCAGAAAGCCATAGTTCCTTTAGAGTTGAAAAGTGGAAAGG
CATCTGTGTCGGCAGAACATCGCGGCCAGCTCGTAATGTATGGAATGATGCTGAGCTTAC
ACAGAAACGAAGACCCCACTGTGGCTTTACAACGTGGACTGTTGCTTTATTTGAGAGACA
AAGTAGACGTG
(371 bp)

- SilkBase 1999-2023 -