SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
9211 O_BomoIG14528_complete:A_BomoIG_DN32661_c2_g1_i1
279bp
 E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0000922 C spindle pole
GO:0000930 C gamma-tubulin complex
GO:0003677 F DNA binding
GO:0003823 F antigen binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005814 C centriole
GO:0005868 C cytoplasmic dynein complex
GO:0006351 P transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0010842 P retina layer formation
GO:0016605 C PML body
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0016925 P protein sumoylation
GO:0019789 F SUMO transferase activity
GO:0030496 C midbody
GO:0032391 C photoreceptor connecting cilium
GO:0034504 P protein localization to nucleus
GO:0035845 P photoreceptor cell outer segment organization
GO:0036064 C ciliary basal body
GO:0042127 P regulation of cell population proliferation
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044547 F DNA topoisomerase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046548 P retinal rod cell development
GO:0046549 P retinal cone cell development
GO:0046872 F metal ion binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051457 P maintenance of protein location in nucleus
GO:0061630 F ubiquitin protein ligase activity
GO:0070936 P protein K48-linked ubiquitination
9212 O_BomoIG14529_complete:A_BomoIG_DN32661_c2_g1_i5
279bp
 E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
GO:0000151 C ubiquitin ligase complex
GO:0000209 P protein polyubiquitination
GO:0000922 C spindle pole
GO:0000930 C gamma-tubulin complex
GO:0003677 F DNA binding
GO:0003823 F antigen binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005814 C centriole
GO:0005868 C cytoplasmic dynein complex
GO:0006351 P transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006513 P protein monoubiquitination
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0010842 P retina layer formation
GO:0016605 C PML body
GO:0016607 C nuclear speck
GO:0016874 F ligase activity
GO:0016925 P protein sumoylation
GO:0019789 F SUMO transferase activity
GO:0030496 C midbody
GO:0032391 C photoreceptor connecting cilium
GO:0034504 P protein localization to nucleus
GO:0035845 P photoreceptor cell outer segment organization
GO:0036064 C ciliary basal body
GO:0042127 P regulation of cell population proliferation
GO:0042771 P intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043066 P negative regulation of apoptotic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044547 F DNA topoisomerase binding
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046548 P retinal rod cell development
GO:0046549 P retinal cone cell development
GO:0046872 F metal ion binding
GO:0051443 P positive regulation of ubiquitin-protein transferase activity
GO:0051457 P maintenance of protein location in nucleus
GO:0061630 F ubiquitin protein ligase activity
GO:0070936 P protein K48-linked ubiquitination
9213 O_BomoIG1452_complete:A_BomoIG_DN30243_c1_g1_i5
102bp
9214 O_BomoIG14530_complete:A_BomoIG_DN32661_c2_g1_i6
194bp
 E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005652 C nuclear lamina
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006997 P nucleus organization
GO:0007060 P male meiosis chromosome segregation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007140 P male meiotic nuclear division
GO:0008270 F zinc ion binding
GO:0010032 P meiotic chromosome condensation
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0071763 P nuclear membrane organization
9215 O_BomoIG14531_complete:A_BomoIG_DN32661_c2_g8_i1
456bp
 serine/threonine-protein_kinase_26_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000278 P mitotic cell cycle
GO:0003674 F molecular_function
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0008631 P intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030336 P negative regulation of cell migration
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048680 P positive regulation of axon regeneration
9216 O_BomoIG14532_complete:A_BomoIG_DN32661_c2_g8_i2
516bp
 serine/threonine-protein_kinase_26_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000278 P mitotic cell cycle
GO:0003674 F molecular_function
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0008631 P intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030336 P negative regulation of cell migration
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048680 P positive regulation of axon regeneration
9217 O_BomoIG14533_complete:A_BomoIG_DN32661_c2_g8_i3
110bp
 Serine/threonine-protein_kinase_24_[Operophtera_brumata]
GO:0000166 F nucleotide binding
GO:0000278 P mitotic cell cycle
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006468 P protein phosphorylation
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016324 C apical plasma membrane
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030154 P cell differentiation
GO:0043066 P negative regulation of apoptotic process
GO:0043407 P negative regulation of MAP kinase activity
GO:0046872 F metal ion binding
GO:0048477 P oogenesis
GO:0051019 F mitogen-activated protein kinase binding
GO:0051321 P meiotic cell cycle
GO:0060281 P regulation of oocyte development
9218 O_BomoIG14534_complete:A_BomoIG_DN32661_c2_g8_i4
516bp
 serine/threonine-protein_kinase_26_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000166 F nucleotide binding
GO:0000278 P mitotic cell cycle
GO:0003674 F molecular_function
GO:0004672 F protein kinase activity
GO:0004674 F protein serine/threonine kinase activity
GO:0004702 F obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity
GO:0005524 F ATP binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006468 P protein phosphorylation
GO:0006915 P apoptotic process
GO:0008631 P intrinsic apoptotic signaling pathway in response to oxidative stress
GO:0016020 C membrane
GO:0016301 F kinase activity
GO:0016310 P phosphorylation
GO:0016740 F transferase activity
GO:0023014 P signal transduction
GO:0030336 P negative regulation of cell migration
GO:0046777 P protein autophosphorylation
GO:0046872 F metal ion binding
GO:0048680 P positive regulation of axon regeneration
9219 O_BomoIG14535_complete:A_BomoIG_DN32661_c2_g1_i7
474bp
 E3_ubiquitin-protein_ligase_Topors_[Bombyx_mori]
GO:0000209 P protein polyubiquitination
GO:0003677 F DNA binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005652 C nuclear lamina
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006997 P nucleus organization
GO:0007060 P male meiosis chromosome segregation
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007140 P male meiotic nuclear division
GO:0008270 F zinc ion binding
GO:0010032 P meiotic chromosome condensation
GO:0016568 P chromatin organization
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051299 P centrosome separation
GO:0061630 F ubiquitin protein ligase activity
GO:0071763 P nuclear membrane organization
9220 O_BomoIG14536_5prime_partial:A_BomoIG_DN32662_c3_g2_i1
366bp
 uncharacterized_protein_LOC101736142_isoform_X2_[Bombyx_mori]
9221 O_BomoIG14537_complete:A_BomoIG_DN32662_c3_g2_i1
131bp
9222 O_BomoIG14538_complete:A_BomoIG_DN32662_c3_g3_i1
1429bp
 unconventional_myosin-Va_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0031941 C filamentous actin
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0060001 F minus-end directed microfilament motor activity
GO:0072659 P protein localization to plasma membrane
9223 O_BomoIG14539_complete:A_BomoIG_DN32662_c3_g3_i1
246bp
GO:0000166 F nucleotide binding
GO:0005388 F P-type calcium transporter activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016529 C sarcoplasmic reticulum
GO:0016787 F hydrolase activity
GO:0033017 C sarcoplasmic reticulum membrane
GO:0046872 F metal ion binding
GO:0070588 P calcium ion transmembrane transport
9224 O_BomoIG1453_complete:A_BomoIG_DN30243_c1_g1_i5
100bp
9225 O_BomoIG14540_complete:A_BomoIG_DN32662_c3_g3_i1
150bp
9226 O_BomoIG14541_complete:A_BomoIG_DN32662_c3_g3_i1
141bp
9227 O_BomoIG14542_complete:A_BomoIG_DN32662_c3_g3_i1
127bp
9228 O_BomoIG14543_complete:A_BomoIG_DN32662_c3_g3_i1
106bp
9229 O_BomoIG14544_internal:A_BomoIG_DN32662_c3_g3_i2
737bp
 unconventional_myosin-Va_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005794 C Golgi apparatus
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0031941 C filamentous actin
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0060001 F minus-end directed microfilament motor activity
GO:0072659 P protein localization to plasma membrane
9230 O_BomoIG14545_5prime_partial:A_BomoIG_DN32662_c3_g3_i2
242bp
9231 O_BomoIG14546_complete:A_BomoIG_DN32662_c3_g3_i2
127bp
9232 O_BomoIG14547_complete:A_BomoIG_DN32662_c3_g3_i2
112bp
9233 O_BomoIG14548_3prime_partial:A_BomoIG_DN32662_c3_g3_i3
726bp
 unconventional_myosin-Va_[Bombyx_mori]
GO:0000146 F microfilament motor activity
GO:0000166 F nucleotide binding
GO:0001726 C ruffle
GO:0001750 C photoreceptor outer segment
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0005509 F calcium ion binding
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005777 C peroxisome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005882 C intermediate filament
GO:0005884 C actin filament
GO:0006582 P melanin metabolic process
GO:0006810 P transport
GO:0006887 P exocytosis
GO:0006892 P post-Golgi vesicle-mediated transport
GO:0007268 P chemical synaptic transmission
GO:0007601 P visual perception
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0017137 F small GTPase binding
GO:0030048 P actin filament-based movement
GO:0030050 P vesicle transport along actin filament
GO:0030073 P insulin secretion
GO:0030141 C secretory granule
GO:0030318 P melanocyte differentiation
GO:0030426 C growth cone
GO:0031585 P regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
GO:0031982 C vesicle
GO:0031987 P locomotion involved in locomotory behavior
GO:0032252 P secretory granule localization
GO:0032400 P melanosome localization
GO:0032402 P melanosome transport
GO:0032433 C filopodium tip
GO:0032593 C insulin-responsive compartment
GO:0032869 P cellular response to insulin stimulus
GO:0035371 C microtubule plus-end
GO:0042438 P melanin biosynthetic process
GO:0042470 C melanosome
GO:0042476 P odontogenesis
GO:0042552 P myelination
GO:0042641 C actomyosin
GO:0042759 P long-chain fatty acid biosynthetic process
GO:0043005 C neuron projection
GO:0043025 C neuronal cell body
GO:0043473 P pigmentation
GO:0044822 F RNA binding
GO:0048066 P developmental pigmentation
GO:0050808 P synapse organization
GO:0051643 P endoplasmic reticulum localization
GO:0055037 C recycling endosome
GO:0070062 C extracellular exosome
GO:0072659 P protein localization to plasma membrane
GO:1903358 P regulation of Golgi organization
9234 O_BomoIG14549_5prime_partial:A_BomoIG_DN32662_c3_g3_i3
242bp
9235 O_BomoIG1454_complete:A_BomoIG_DN30243_c1_g3_i4
139bp
 LSM1-like_protein_[Bombyx_mori]
GO:0000290 P deadenylation-dependent decapping of nuclear-transcribed mRNA
GO:0000339 F RNA cap binding
GO:0000932 C P-body
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0019827 P stem cell population maintenance
GO:0030529 C ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0045665 P negative regulation of neuron differentiation
GO:0071044 P histone mRNA catabolic process
9236 O_BomoIG14550_complete:A_BomoIG_DN32662_c3_g3_i3
127bp
9237 O_BomoIG14551_complete:A_BomoIG_DN32662_c3_g3_i3
125bp
9238 O_BomoIG14552_complete:A_BomoIG_DN32662_c3_g3_i5
374bp
 unconventional_myosin-Va_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003774 F cytoskeletal motor activity
GO:0003779 F actin binding
GO:0003824 F catalytic activity
GO:0005516 F calmodulin binding
GO:0005524 F ATP binding
GO:0005737 C cytoplasm
GO:0005903 C brush border
GO:0006810 P transport
GO:0008152 P metabolic process
GO:0015031 P protein transport
GO:0016192 P vesicle-mediated transport
GO:0016459 C myosin complex
GO:0017137 F small GTPase binding
GO:0032439 P endosomal transport
GO:0043234 C protein-containing complex
GO:0045179 C apical cortex
GO:0070062 C extracellular exosome
9239 O_BomoIG14553_complete:A_BomoIG_DN32662_c3_g3_i5
246bp
GO:0000166 F nucleotide binding
GO:0005388 F P-type calcium transporter activity
GO:0005524 F ATP binding
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006816 P calcium ion transport
GO:0006874 P cellular calcium ion homeostasis
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016529 C sarcoplasmic reticulum
GO:0016787 F hydrolase activity
GO:0033017 C sarcoplasmic reticulum membrane
GO:0046872 F metal ion binding
GO:0070588 P calcium ion transmembrane transport
9240 O_BomoIG14554_3prime_partial:A_BomoIG_DN32662_c3_g6_i3
129bp
 protein_RER1_[Bombyx_mori]
GO:0000139 C Golgi membrane
GO:0005794 C Golgi apparatus
GO:0006890 P retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
GO:0016020 C membrane
GO:0016021 C integral component of membrane
previous next from show/104180

- SilkBase 1999-2023 -