SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
8581 O_BomoIG13961_complete:A_BomoIG_DN29668_c0_g1_i5
117bp
8582 O_BomoIG13962_complete:A_BomoIG_DN29668_c0_g1_i5
105bp
8583 O_BomoIG13963_complete:A_BomoIG_DN29668_c0_g1_i5
105bp
8584 O_BomoIG13964_complete:A_BomoIG_DN29695_c0_g1_i2
562bp
 zinc_finger_protein_528_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
8585 O_BomoIG13965_complete:A_BomoIG_DN29695_c0_g1_i3
185bp
 zinc_finger_protein_528_[Bombyx_mori]
8586 O_BomoIG13966_complete:A_BomoIG_DN29695_c0_g1_i4
322bp
 zinc_finger_protein_528_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
8587 O_BomoIG13967_complete:A_BomoIG_DN29695_c0_g1_i4
185bp
 zinc_finger_protein_528_[Bombyx_mori]
8588 O_BomoIG13968_internal:A_BomoIG_DN29695_c0_g1_i5
139bp
 zinc_finger_protein_528_[Bombyx_mori]
8589 O_BomoIG13969_complete:A_BomoIG_DN29695_c0_g1_i6
417bp
 zinc_finger_protein_528_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
8590 O_BomoIG1396_complete:A_BomoIG_DN30230_c3_g1_i1
252bp
 ribosome_maturation_protein_SBDS_[Bombyx_mori]
GO:0000922 C spindle pole
GO:0001833 P inner cell mass cell proliferation
GO:0003674 F molecular_function
GO:0003723 F RNA binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005819 C spindle
GO:0005856 C cytoskeleton
GO:0006364 P rRNA processing
GO:0008017 F microtubule binding
GO:0008150 P biological_process
GO:0008283 P cell population proliferation
GO:0019843 F rRNA binding
GO:0030282 P bone mineralization
GO:0030595 P leukocyte chemotaxis
GO:0042254 P ribosome biogenesis
GO:0042256 P mature ribosome assembly
GO:0043022 F ribosome binding
GO:0044822 F RNA binding
GO:0048539 P bone marrow development
8591 O_BomoIG13970_complete:A_BomoIG_DN29695_c0_g1_i7
302bp
 zinc_finger_protein_528_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
8592 O_BomoIG13971_3prime_partial:A_BomoIG_DN29695_c0_g1_i8
209bp
 zinc_finger_protein_528_[Bombyx_mori]
8593 O_BomoIG13972_complete:A_BomoIG_DN29696_c0_g1_i1
1079bp
 uncharacterized_protein_LOC101742598_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0042803 F protein homodimerization activity
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
8594 O_BomoIG13973_complete:A_BomoIG_DN29696_c0_g1_i2
599bp
 uncharacterized_protein_LOC101742598_isoform_X3_[Bombyx_mori]
8595 O_BomoIG13974_complete:A_BomoIG_DN29696_c0_g1_i2
379bp
 uncharacterized_protein_LOC101742598_isoform_X2_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
8596 O_BomoIG13975_complete:A_BomoIG_DN29696_c0_g1_i3
850bp
 RE1-silencing_transcription_factor_isoform_X4_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001764 P neuron migration
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0010629 P negative regulation of gene expression
GO:0021610 P facial nerve morphogenesis
GO:0021785 P branchiomotor neuron axon guidance
GO:0022008 P neurogenesis
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
8597 O_BomoIG13976_complete:A_BomoIG_DN29696_c0_g1_i4
844bp
 uncharacterized_protein_LOC101742598_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0042803 F protein homodimerization activity
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
8598 O_BomoIG13977_complete:A_BomoIG_DN29696_c0_g1_i5
901bp
 RE1-silencing_transcription_factor_isoform_X4_[Bombyx_mori]
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001764 P neuron migration
GO:0003676 F nucleic acid binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0010629 P negative regulation of gene expression
GO:0021610 P facial nerve morphogenesis
GO:0021785 P branchiomotor neuron axon guidance
GO:0022008 P neurogenesis
GO:0045879 P negative regulation of smoothened signaling pathway
GO:0046872 F metal ion binding
GO:0060831 P smoothened signaling pathway involved in dorsal/ventral neural tube patterning
8599 O_BomoIG13978_complete:A_BomoIG_DN29696_c0_g1_i6
1028bp
 uncharacterized_protein_LOC101742598_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0042803 F protein homodimerization activity
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
8600 O_BomoIG13979_complete:A_BomoIG_DN29696_c0_g1_i7
1072bp
 uncharacterized_protein_LOC101742598_isoform_X3_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
8601 O_BomoIG1397_complete:A_BomoIG_DN30230_c3_g9_i1
507bp
 tRNA-splicing_ligase_RtcB_homolog_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003972 F RNA ligase (ATP) activity
GO:0005524 F ATP binding
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006396 P RNA processing
GO:0008033 P tRNA processing
GO:0008452 F RNA ligase activity
GO:0016874 F ligase activity
GO:0022008 P neurogenesis
GO:0046872 F metal ion binding
GO:0072669 C tRNA-splicing ligase complex
GO:2000237 P positive regulation of tRNA processing
8602 O_BomoIG13980_complete:A_BomoIG_DN29696_c0_g1_i8
1059bp
 uncharacterized_protein_LOC101742598_isoform_X1_[Bombyx_mori]
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0042803 F protein homodimerization activity
GO:0044212 F transcription cis-regulatory region binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046872 F metal ion binding
8603 O_BomoIG13981_complete:A_BomoIG_DN29696_c0_g1_i9
1021bp
 uncharacterized_protein_LOC101742598_isoform_X3_[Bombyx_mori]
GO:0000977 F RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0030154 P cell differentiation
GO:0046872 F metal ion binding
8604 O_BomoIG13982_complete:A_BomoIG_DN29696_c0_g1_i10
252bp
 uncharacterized_protein_LOC101742598_isoform_X2_[Bombyx_mori]
8605 O_BomoIG13983_complete:A_BomoIG_DN29696_c0_g1_i11
599bp
 uncharacterized_protein_LOC101742598_isoform_X3_[Bombyx_mori]
8606 O_BomoIG13984_complete:A_BomoIG_DN29696_c0_g1_i11
372bp
 uncharacterized_protein_LOC101742598_isoform_X3_[Bombyx_mori]
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
8607 O_BomoIG13985_5prime_partial:A_BomoIG_DN29687_c0_g1_i1
110bp
8608 O_BomoIG13986_internal:A_BomoIG_DN29626_c0_g1_i2
99bp
Chain_A,_Solution_Structure_Of_The_Rmm-Ctd_Domains_Of_Human_Line-1_Orf1p
GO:0000166 F nucleotide binding
GO:0000932 C P-body
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005783 C endoplasmic reticulum
GO:0010494 C cytoplasmic stress granule
GO:0030529 C ribonucleoprotein complex
GO:0032197 P transposition, RNA-mediated
GO:0042802 F identical protein binding
8609 O_BomoIG13987_complete:A_BomoIG_DN29626_c0_g1_i3
114bp
hypothetical_protein_M569_13380,_partial_[Genlisea_aurea]
GO:0000166 F nucleotide binding
GO:0000932 C P-body
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005783 C endoplasmic reticulum
GO:0010494 C cytoplasmic stress granule
GO:0030529 C ribonucleoprotein complex
GO:0032197 P transposition, RNA-mediated
GO:0042802 F identical protein binding
8610 O_BomoIG13988_complete:A_BomoIG_DN29626_c0_g1_i4
114bp
hypothetical_protein_M569_13380,_partial_[Genlisea_aurea]
GO:0000166 F nucleotide binding
GO:0000932 C P-body
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005783 C endoplasmic reticulum
GO:0010494 C cytoplasmic stress granule
GO:0030529 C ribonucleoprotein complex
GO:0032197 P transposition, RNA-mediated
GO:0042802 F identical protein binding
previous next from show/104180

- SilkBase 1999-2023 -