SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

previous next from show/104180
No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
811 O_BomoIG100730_complete:A_BomoIG_DN30710_c4_g4_i2
178bp
 hypothetical_protein_BJF88_09385_[Cellulosimicrobium_sp._CUA-896]
812 O_BomoIG100731_complete:A_BomoIG_DN30710_c4_g2_i3
435bp
 collagen_alpha-1(IX)_chain_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
813 O_BomoIG100732_complete:A_BomoIG_DN30710_c4_g2_i3
222bp
 hypothetical_protein_HELRODRAFT_123385,_partial_[Helobdella_robusta]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
814 O_BomoIG100733_3prime_partial:A_BomoIG_DN30710_c4_g1_i8
170bp
 leucine-rich_repeat_protein_SHOC-2_isoform_X1_[Bombyx_mori]
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005789 C endoplasmic reticulum membrane
GO:0005886 C plasma membrane
GO:0008022 F protein C-terminus binding
GO:0010976 P positive regulation of neuron projection development
GO:0014069 C postsynaptic density
GO:0014070 P response to organic cyclic compound
GO:0015629 C actin cytoskeleton
GO:0016020 C membrane
GO:0030054 C cell junction
GO:0030175 C filopodium
GO:0043005 C neuron projection
GO:0043194 C axon initial segment
GO:0043197 C dendritic spine
GO:0045202 C synapse
GO:0045211 C postsynaptic membrane
815 O_BomoIG100734_5prime_partial:A_BomoIG_DN30710_c4_g4_i3
243bp
 ATP-binding_cassette_sub-family_A_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005319 F lipid transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0044267 P cellular protein metabolic process
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097232 C lamellar body membrane
GO:0097233 C alveolar lamellar body membrane
816 O_BomoIG100735_3prime_partial:A_BomoIG_DN30710_c4_g4_i3
225bp
 phenol_hydroxylase,_putative_[Burkholderia_pseudomallei_1710b]
817 O_BomoIG100736_complete:A_BomoIG_DN30710_c4_g4_i3
142bp
 hypothetical_protein_BJF88_09385_[Cellulosimicrobium_sp._CUA-896]
818 O_BomoIG100737_complete:A_BomoIG_DN30710_c4_g1_i9
403bp
 leucine-rich_repeat_protein_SHOC-2_isoform_X3_[Bombyx_mori]
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0008150 P biological_process
819 O_BomoIG100738_complete:A_BomoIG_DN30710_c4_g3_i3
271bp
 1-acylglycerol-3-phosphate_O-acyltransferase_2_isoform_X1_[Bombyx_mori]
GO:0001819 P positive regulation of cytokine production
GO:0003841 F 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006654 P phosphatidic acid biosynthetic process
GO:0008152 P metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046474 P glycerophospholipid biosynthetic process
820 O_BomoIG100739_3prime_partial:A_BomoIG_DN30710_c4_g2_i4
588bp
 collagen_alpha-1(IX)_chain_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005737 C cytoplasm
GO:0005788 C endoplasmic reticulum lumen
821 O_BomoIG10073_complete:A_BomoIG_DN33756_c1_g1_i7
114bp
822 O_BomoIG100740_complete:A_BomoIG_DN30710_c4_g2_i4
222bp
 hypothetical_protein_HELRODRAFT_123385,_partial_[Helobdella_robusta]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
823 O_BomoIG100741_complete:A_BomoIG_DN30710_c4_g2_i5
332bp
 aldo-keto_reductase_AKR2E4-like_[Bombyx_mori]
GO:0006629 P lipid metabolic process
GO:0008202 P steroid metabolic process
GO:0016491 F oxidoreductase activity
GO:0055114 P obsolete oxidation-reduction process
824 O_BomoIG100742_5prime_partial:A_BomoIG_DN30710_c4_g2_i6
191bp
 collagen_alpha-1(IX)_chain_[Bombyx_mori]
GO:0002376 P immune system process
GO:0005044 F scavenger receptor activity
GO:0005581 C collagen trimer
GO:0006898 P receptor-mediated endocytosis
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0045087 P innate immune response
825 O_BomoIG100743_5prime_partial:A_BomoIG_DN30710_c4_g2_i6
100bp
826 O_BomoIG100744_3prime_partial:A_BomoIG_DN30710_c4_g4_i4
1282bp
 ATP-binding_cassette_sub-family_A_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005319 F lipid transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0044267 P cellular protein metabolic process
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097232 C lamellar body membrane
GO:0097233 C alveolar lamellar body membrane
827 O_BomoIG100745_complete:A_BomoIG_DN30710_c4_g4_i4
227bp
828 O_BomoIG100746_complete:A_BomoIG_DN30710_c4_g4_i4
178bp
 hypothetical_protein_BJF88_09385_[Cellulosimicrobium_sp._CUA-896]
829 O_BomoIG100747_complete:A_BomoIG_DN30710_c4_g4_i4
155bp
830 O_BomoIG100748_complete:A_BomoIG_DN30710_c4_g4_i5
692bp
 ATP-binding_cassette_sub-family_A_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0002790 P peptide secretion
GO:0005102 F signaling receptor binding
GO:0005215 F transporter activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005543 F phospholipid binding
GO:0005548 F phospholipid transporter activity
GO:0005789 C endoplasmic reticulum membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006497 P protein lipidation
GO:0006629 P lipid metabolic process
GO:0006810 P transport
GO:0006911 P phagocytosis, engulfment
GO:0007040 P lysosome organization
GO:0007186 P G protein-coupled receptor signaling pathway
GO:0007584 P response to nutrient
GO:0008202 P steroid metabolic process
GO:0008203 P cholesterol metabolic process
GO:0008509 F anion transmembrane transporter activity
GO:0009897 C external side of plasma membrane
GO:0009986 C cell surface
GO:0010745 P negative regulation of macrophage derived foam cell differentiation
GO:0010875 P positive regulation of cholesterol efflux
GO:0010887 P negative regulation of cholesterol storage
GO:0015485 F cholesterol binding
GO:0015914 P phospholipid transport
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016197 P endosomal transport
GO:0016887 F ATP hydrolysis activity
GO:0017127 F cholesterol transfer activity
GO:0019905 F syntaxin binding
GO:0030139 C endocytic vesicle
GO:0030301 P cholesterol transport
GO:0030819 P obsolete positive regulation of cAMP biosynthetic process
GO:0031267 F small GTPase binding
GO:0032367 P intracellular cholesterol transport
GO:0032489 P regulation of Cdc42 protein signal transduction
GO:0033344 P cholesterol efflux
GO:0033700 P phospholipid efflux
GO:0034185 F apolipoprotein binding
GO:0034186 F apolipoprotein A-I binding
GO:0034188 F apolipoprotein A-I receptor activity
GO:0034364 C high-density lipoprotein particle
GO:0034380 P high-density lipoprotein particle assembly
GO:0034616 P response to laminar fluid shear stress
GO:0038027 P apolipoprotein A-I-mediated signaling pathway
GO:0042157 P lipoprotein metabolic process
GO:0042158 P lipoprotein biosynthetic process
GO:0042493 P response to xenobiotic stimulus
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0042632 P cholesterol homeostasis
GO:0043231 C intracellular membrane-bounded organelle
GO:0043691 P reverse cholesterol transport
GO:0045121 C membrane raft
GO:0045332 P phospholipid translocation
GO:0045335 C phagocytic vesicle
GO:0048471 C perinuclear region of cytoplasm
GO:0050702 P interleukin-1 beta production
GO:0051117 F ATPase binding
GO:0055091 P phospholipid homeostasis
GO:0055098 P cellular response to low-density lipoprotein particle stimulus
GO:0060155 P platelet dense granule organization
GO:0071222 P cellular response to lipopolysaccharide
GO:0071300 P cellular response to retinoic acid
GO:0071397 P cellular response to cholesterol
GO:0098656 P anion transmembrane transport
831 O_BomoIG100749_complete:A_BomoIG_DN30710_c4_g4_i5
238bp
 phenol_hydroxylase,_putative_[Burkholderia_pseudomallei_1710b]
832 O_BomoIG10074_complete:A_BomoIG_DN33756_c1_g1_i7
100bp
833 O_BomoIG100750_complete:A_BomoIG_DN30710_c4_g4_i5
155bp
834 O_BomoIG100751_complete:A_BomoIG_DN30710_c4_g4_i5
142bp
 hypothetical_protein_BJF88_09385_[Cellulosimicrobium_sp._CUA-896]
835 O_BomoIG100752_3prime_partial:A_BomoIG_DN30710_c4_g4_i6
165bp
 ATP-binding_cassette_sub-family_A_member_3_[Bombyx_mori]
836 O_BomoIG100753_complete:A_BomoIG_DN30710_c4_g2_i7
552bp
 collagen_alpha-1(IX)_chain_[Bombyx_mori]
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005737 C cytoplasm
GO:0005788 C endoplasmic reticulum lumen
837 O_BomoIG100754_complete:A_BomoIG_DN30710_c4_g3_i4
271bp
 1-acylglycerol-3-phosphate_O-acyltransferase_2_isoform_X1_[Bombyx_mori]
GO:0001819 P positive regulation of cytokine production
GO:0003841 F 1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0006629 P lipid metabolic process
GO:0006654 P phosphatidic acid biosynthetic process
GO:0008152 P metabolic process
GO:0008654 P phospholipid biosynthetic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016024 P CDP-diacylglycerol biosynthetic process
GO:0016740 F transferase activity
GO:0016746 F acyltransferase activity
GO:0046474 P glycerophospholipid biosynthetic process
838 O_BomoIG100755_complete:A_BomoIG_DN30710_c4_g4_i7
818bp
 ATP-binding_cassette_sub-family_A_member_3_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0005215 F transporter activity
GO:0005524 F ATP binding
GO:0005615 C extracellular space
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006869 P lipid transport
GO:0008152 P metabolic process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016887 F ATP hydrolysis activity
GO:0042626 F ATPase-coupled transmembrane transporter activity
GO:0051384 P response to glucocorticoid
GO:0055085 P transmembrane transport
GO:0097208 C alveolar lamellar body
GO:0097233 C alveolar lamellar body membrane
839 O_BomoIG100756_complete:A_BomoIG_DN30710_c4_g4_i7
178bp
 hypothetical_protein_BJF88_09385_[Cellulosimicrobium_sp._CUA-896]
840 O_BomoIG100757_complete:A_BomoIG_DN30710_c4_g4_i7
155bp
previous next from show/104180

- SilkBase 1999-2023 -