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Last updated: 2022/11/18

Search ORF from Assembled RNA-Seq

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No. Name
Length
 Chromosome No./Scaffold Id
Scaffold Length		 BLAST (vs nr) Gene ontology
7891 O_BomoIG1333_complete:A_BomoIG_DN30202_c7_g3_i11
260bp
 nitric_oxide-associated_protein_1_[Bombyx_mori]
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005515 F protein binding
GO:0005525 F GTP binding
GO:0005739 C mitochondrion
GO:0005743 C mitochondrial inner membrane
GO:0006915 P apoptotic process
GO:0010941 P regulation of cell death
GO:0016020 C membrane
GO:0031314 C extrinsic component of mitochondrial inner membrane
GO:0032543 P mitochondrial translation
GO:0042254 P ribosome biogenesis
GO:0043457 P regulation of cellular respiration
GO:0044822 F RNA binding
7892 O_BomoIG13340_complete:A_BomoIG_DN31307_c1_g1_i2
179bp
7893 O_BomoIG13341_complete:A_BomoIG_DN31307_c1_g1_i3
152bp
 cullin-4A_[Bombyx_mori]
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035518 P histone H2A monoubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
7894 O_BomoIG13342_complete:A_BomoIG_DN31307_c1_g1_i4
269bp
 cullin-4A_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0000717 P nucleotide-excision repair, DNA duplex unwinding
GO:0001701 P in utero embryonic development
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006293 P nucleotide-excision repair, preincision complex stabilization
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007050 P regulation of cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0030097 P hemopoiesis
GO:0030853 P negative regulation of granulocyte differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035019 P somatic stem cell population maintenance
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051246 P regulation of protein metabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070911 P global genome nucleotide-excision repair
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:0097193 P intrinsic apoptotic signaling pathway
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:2000001 P regulation of DNA damage checkpoint
GO:2000819 P regulation of nucleotide-excision repair
7895 O_BomoIG13343_complete:A_BomoIG_DN31307_c1_g1_i5
429bp
 mitochondrial_intermediate_peptidase_isoform_X1_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7896 O_BomoIG13344_5prime_partial:A_BomoIG_DN31307_c1_g1_i6
260bp
 mitochondrial_intermediate_peptidase_isoform_X1_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006518 P peptide metabolic process
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7897 O_BomoIG13345_complete:A_BomoIG_DN31307_c1_g1_i7
794bp
 cullin-4A_[Bombyx_mori]
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035518 P histone H2A monoubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
7898 O_BomoIG13346_complete:A_BomoIG_DN31307_c1_g1_i7
699bp
 mitochondrial_intermediate_peptidase_isoform_X1_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7899 O_BomoIG13347_complete:A_BomoIG_DN31307_c1_g1_i7
179bp
7900 O_BomoIG13348_complete:A_BomoIG_DN31307_c1_g1_i8
221bp
 mitochondrial_intermediate_peptidase_isoform_X2_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006518 P peptide metabolic process
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7901 O_BomoIG13349_internal:A_BomoIG_DN31307_c1_g1_i9
296bp
 cullin-4A_[Bombyx_mori]
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0000717 P nucleotide-excision repair, DNA duplex unwinding
GO:0001701 P in utero embryonic development
GO:0005515 F protein binding
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006293 P nucleotide-excision repair, preincision complex stabilization
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006295 P nucleotide-excision repair, DNA incision, 3'-to lesion
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007050 P regulation of cell cycle
GO:0008284 P positive regulation of cell population proliferation
GO:0008285 P negative regulation of cell population proliferation
GO:0016032 P viral process
GO:0016567 P protein ubiquitination
GO:0030097 P hemopoiesis
GO:0030853 P negative regulation of granulocyte differentiation
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031464 C Cul4A-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0033683 P nucleotide-excision repair, DNA incision
GO:0035019 P somatic stem cell population maintenance
GO:0042769 P obsolete DNA damage response, detection of DNA damage
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051246 P regulation of protein metabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070911 P global genome nucleotide-excision repair
GO:0080008 C Cul4-RING E3 ubiquitin ligase complex
GO:0097193 P intrinsic apoptotic signaling pathway
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
GO:2000001 P regulation of DNA damage checkpoint
GO:2000819 P regulation of nucleotide-excision repair
7902 O_BomoIG1334_complete:A_BomoIG_DN30202_c7_g3_i11
123bp
7903 O_BomoIG13350_complete:A_BomoIG_DN31307_c1_g1_i10
249bp
 mitochondrial_intermediate_peptidase_isoform_X2_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7904 O_BomoIG13351_5prime_partial:A_BomoIG_DN31307_c1_g1_i10
105bp
7905 O_BomoIG13352_complete:A_BomoIG_DN31307_c1_g1_i11
699bp
 mitochondrial_intermediate_peptidase_isoform_X1_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7906 O_BomoIG13353_complete:A_BomoIG_DN31307_c1_g1_i11
671bp
 cullin-4A_[Bombyx_mori]
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035518 P histone H2A monoubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
7907 O_BomoIG13354_complete:A_BomoIG_DN31307_c1_g1_i11
179bp
7908 O_BomoIG13355_complete:A_BomoIG_DN31307_c1_g1_i12
519bp
 mitochondrial_intermediate_peptidase_isoform_X2_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7909 O_BomoIG13356_5prime_partial:A_BomoIG_DN31307_c1_g1_i12
105bp
7910 O_BomoIG13357_5prime_partial:A_BomoIG_DN31307_c1_g1_i13
731bp
 mitochondrial_intermediate_peptidase_isoform_X2_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006518 P peptide metabolic process
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7911 O_BomoIG13358_complete:A_BomoIG_DN31307_c1_g1_i13
671bp
 cullin-4A_[Bombyx_mori]
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035518 P histone H2A monoubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
7912 O_BomoIG13359_complete:A_BomoIG_DN31307_c1_g1_i13
179bp
7913 O_BomoIG1335_complete:A_BomoIG_DN30202_c7_g9_i3
493bp
 adenylosuccinate_lyase_[Helicoverpa_armigera]
GO:0003824 F catalytic activity
GO:0004018 F N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity
GO:0006164 P purine nucleotide biosynthetic process
GO:0006189 P 'de novo' IMP biosynthetic process
GO:0009152 P purine ribonucleotide biosynthetic process
GO:0016829 F lyase activity
GO:0044208 P 'de novo' AMP biosynthetic process
GO:0070626 F (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity
7914 O_BomoIG13360_5prime_partial:A_BomoIG_DN31307_c1_g1_i14
558bp
 mitochondrial_intermediate_peptidase_isoform_X1_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006518 P peptide metabolic process
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7915 O_BomoIG13361_5prime_partial:A_BomoIG_DN31307_c1_g1_i14
105bp
7916 O_BomoIG13362_complete:A_BomoIG_DN31307_c1_g1_i15
794bp
 cullin-4A_[Bombyx_mori]
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035518 P histone H2A monoubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
7917 O_BomoIG13363_complete:A_BomoIG_DN31307_c1_g1_i15
702bp
 mitochondrial_intermediate_peptidase_isoform_X2_[Bombyx_mori]
GO:0004222 F metalloendopeptidase activity
GO:0005739 C mitochondrion
GO:0005759 C mitochondrial matrix
GO:0006508 P proteolysis
GO:0006518 P peptide metabolic process
GO:0006627 P protein processing involved in protein targeting to mitochondrion
GO:0008233 F peptidase activity
GO:0008237 F metallopeptidase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
7918 O_BomoIG13364_complete:A_BomoIG_DN31307_c1_g1_i15
179bp
7919 O_BomoIG13365_complete:A_BomoIG_DN31307_c1_g4_i1
125bp
 vacuolar_ATP_synthase_subunit_F_[Bombyx_mori]
GO:0006810 P transport
GO:0006811 P ion transport
GO:0015991 P proton transmembrane transport
GO:0015992 P proton transmembrane transport
GO:0033180 C proton-transporting V-type ATPase, V1 domain
GO:0034220 P ion transmembrane transport
GO:0046961 F proton-transporting ATPase activity, rotational mechanism
7920 O_BomoIG13366_complete:A_BomoIG_DN31307_c1_g1_i16
621bp
 cullin-4A_[Bombyx_mori]
GO:0003684 F damaged DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006281 P DNA repair
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0016567 P protein ubiquitination
GO:0031175 P neuron projection development
GO:0031461 C cullin-RING ubiquitin ligase complex
GO:0031465 C Cul4B-RING E3 ubiquitin ligase complex
GO:0031625 F ubiquitin protein ligase binding
GO:0035518 P histone H2A monoubiquitination
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0045732 P positive regulation of protein catabolic process
GO:0061630 F ubiquitin protein ligase activity
GO:0070062 C extracellular exosome
GO:0070914 P UV-damage excision repair
GO:1900087 P positive regulation of G1/S transition of mitotic cell cycle
previous next from show/104180

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